Search Results

There are 32634 results for: content related to: The Amber biomolecular simulation programs

  1. An overview of the Amber biomolecular simulation package

    Wiley Interdisciplinary Reviews: Computational Molecular Science

    Volume 3, Issue 2, March/April 2013, Pages: 198–210, Romelia Salomon-Ferrer, David A. Case and Ross C. Walker

    Version of Record online : 25 SEP 2012, DOI: 10.1002/wcms.1121

  2. Fossil spiders

    Biological Reviews

    Volume 85, Issue 1, February 2010, Pages: 171–206, Paul A. Selden and David Penney

    Version of Record online : 24 NOV 2009, DOI: 10.1111/j.1469-185X.2009.00099.x



    Volume 47, Issue 2, May 2005, Pages: 441–454, I. ANGELINI and P. BELLINTANI

    Version of Record online : 22 JUN 2005, DOI: 10.1111/j.1475-4754.2005.00212.x

  4. Empirical force-field assessment: The interplay between backbone torsions and noncovalent term scaling

    Journal of Computational Chemistry

    Volume 26, Issue 7, May 2005, Pages: 682–690, Eric J. Sorin and Vijay S. Pande

    Version of Record online : 8 MAR 2005, DOI: 10.1002/jcc.20208

  5. Empirical force fields for biological macromolecules: Overview and issues

    Journal of Computational Chemistry

    Volume 25, Issue 13, October 2004, Pages: 1584–1604, Alexander D. Mackerell Jr.

    Version of Record online : 1 JUL 2004, DOI: 10.1002/jcc.20082

  6. Amber (Part 1)

    Geology Today

    Volume 22, Issue 6, November 2006, Pages: 232–237, R. J. King

    Version of Record online : 13 DEC 2006, DOI: 10.1111/j.1365-2451.2006.00587.x

  7. Improved treatment of cyclic β-amino acids and successful prediction of β-peptide secondary structure using a modified force field: AMBER*C

    Journal of Computational Chemistry

    Volume 21, Issue 9, 15 July 2000, Pages: 763–773, Laurie A. Christianson, Melissa J. Lucero, Daniel H. Appella, Daniel A. Klein and Samuel H. Gellman

    Version of Record online : 4 MAY 2000, DOI: 10.1002/(SICI)1096-987X(20000715)21:9<763::AID-JCC5>3.0.CO;2-C

  8. Provenance investigations of amber jewelry excavated in Lower Silesia (Poland) and dated back to Early Iron Age

    Journal of Raman Spectroscopy

    Volume 43, Issue 11, November 2012, Pages: 1839–1844, Barbara I. Łydżba-Kopczyńska, Bogusław Gediga, Jan Chojcan and Michał Sachanbiński

    Version of Record online : 17 OCT 2012, DOI: 10.1002/jrs.4187

  9. Lennard–Jones parameters for the combined QM/MM method using the B3LYP/6-31G*/AMBER potential

    Journal of Computational Chemistry

    Volume 26, Issue 12, September 2005, Pages: 1270–1278, Marek Freindorf, Yihan Shao, Thomas R. Furlani and Jing Kong

    Version of Record online : 17 JUN 2005, DOI: 10.1002/jcc.20264

  10. New Late Eocene Chrysomelidae (Insecta: Coleoptera) from Baltic, Rovno and Danish ambers

    Papers in Palaeontology

    Volume 2, Issue 1, February 2016, Pages: 117–137, Konstantin S. Nadein, Evgeny E. Perkovsky and Alexey G. Moseyko

    Version of Record online : 17 NOV 2015, DOI: 10.1002/spp2.1034

  11. Fast and accurate predictions of binding free energies using MM-PBSA and MM-GBSA

    Journal of Computational Chemistry

    Volume 31, Issue 4, March 2010, Pages: 797–810, Giulio Rastelli, Alberto Del Rio, Gianluca Degliesposti and Miriam Sgobba

    Version of Record online : 30 JUN 2009, DOI: 10.1002/jcc.21372

  12. Amber from the Alpine Triassic of Lunz (Carnian, Austria): a classic palaeobotanical site


    Volume 60, Issue 5, September 2017, Pages: 743–759, Thilo C. Fischer, Oluwadayo O. Sonibare, Birgitt Aschauer, Eike Kleine-Benne, Paula Braun and Barbara Meller

    Version of Record online : 25 JUL 2017, DOI: 10.1111/pala.12313

  13. Buried amber finds in the coastal deposits of Saaremaa Island, eastern Baltic Sea – their sedimentary environment and possible use by Bronze Age islanders


    Triine Nirgi, Alar Rosentau, Mirja Ots, Signe Vahur and Aivar Kriiska

    Version of Record online : 27 FEB 2017, DOI: 10.1111/bor.12236

  14. Examination of amber and related materials by NMR spectroscopy

    Magnetic Resonance in Chemistry

    Volume 53, Issue 1, January 2015, Pages: 2–8, Joseph B. Lambert, Jorge A. Santiago-Blay, Yuyang Wu and Allison J. Levy

    Version of Record online : 31 AUG 2014, DOI: 10.1002/mrc.4121

  15. The implementation of a fast and accurate QM/MM potential method in Amber

    Journal of Computational Chemistry

    Volume 29, Issue 7, May 2008, Pages: 1019–1031, Ross C. Walker, Michael F. Crowley and David A. Case

    Version of Record online : 10 DEC 2007, DOI: 10.1002/jcc.20857

  16. Phylogeny of ensign scale insects (Hemiptera: Coccoidea: Ortheziidae) based on the morphology of Recent and fossil females

    Systematic Entomology

    Volume 37, Issue 4, October 2012, Pages: 758–783, ISABELLE M. VEA and DAVID A. GRIMALDI

    Version of Record online : 11 SEP 2012, DOI: 10.1111/j.1365-3113.2012.00638.x

  17. Ab initio construction of polypeptide fragments: Accuracy of loop decoy discrimination by an all-atom statistical potential and the AMBER force field with the Generalized Born solvation model

    Proteins: Structure, Function, and Bioinformatics

    Volume 51, Issue 1, 1 April 2003, Pages: 21–40, Paul I. W. de Bakker, Mark A. DePristo, David F. Burke and Tom L. Blundell

    Version of Record online : 8 FEB 2003, DOI: 10.1002/prot.10235

  18. An evolutionary history embedded in amber: reflection of the Mesozoic shift in weevil-dominated (Coleoptera: Curculionoidea) faunas

    Zoological Journal of the Linnean Society

    Volume 171, Issue 3, July 2014, Pages: 534–553, David Peris, Steven R. Davis, Michael S. Engel and Xavier Delclòs

    Version of Record online : 27 JUN 2014, DOI: 10.1111/zoj.12149

  19. Fake it till you make it—the uncanny art of forging amber

    Geology Today

    Volume 31, Issue 1, January/February 2015, Pages: 21–27, Mats E. Eriksson and George O. Poinar Jr.

    Version of Record online : 22 JAN 2015, DOI: 10.1111/gto.12083

  20. Calibration of force-field dependency in free energy landscapes of peptide conformations by quantum chemical calculations

    Journal of Computational Chemistry

    Volume 23, Issue 4, March 2002, Pages: 470–476, Satoshi Ono, Masataka Kuroda, Junichi Higo, Nobuyuki Nakajima and Haruki Nakamura

    Version of Record online : 24 JAN 2002, DOI: 10.1002/jcc.10032