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    LTHREADER: Prediction of extracellular ligand–receptor interactions in cytokines using localized threading

    Protein Science

    Volume 17, Issue 2, February 2008, Pages: 279–292, Vinay Pulim, Jadwiga Bienkowska and Bonnie Berger

    Article first published online : 2 JAN 2009, DOI: 10.1110/ps.073178108

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    Proton and metal ion-dependent assembly of a model diiron protein

    Protein Science

    Volume 10, Issue 5, May 2001, Pages: 958–969, Annette Pasternak, Justin Kaplan, James D. Lear and William F. Degrado

    Article first published online : 31 DEC 2008, DOI: 10.1110/ps.52101

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    Human embryonic, fetal, and adult hemoglobins have different subunit interface strengths. Correlation with lifespan in the red cell

    Protein Science

    Volume 16, Issue 8, August 2007, Pages: 1641–1658, Lois R. Manning, J. Eric Russell, Julio C. Padovan, Brian T. Chait, Anthony Popowicz, Robert S. Manning and James M. Manning

    Article first published online : 2 JAN 2009, DOI: 10.1110/ps.072891007

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    MAMMOTH (Matching molecular models obtained from theory): An automated method for model comparison

    Protein Science

    Volume 11, Issue 11, November 2002, Pages: 2606–2621, Angel R. Ortiz, Charlie E.M. Strauss and Osvaldo Olmea

    Article first published online : 13 APR 2009, DOI: 10.1110/ps.0215902

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    How common is the funnel-like energy landscape in protein-protein interactions?

    Protein Science

    Volume 10, Issue 8, August 2001, Pages: 1572–1583, Andrei Tovchigrechko and Ilya A. Vakser

    Article first published online : 31 DEC 2008, DOI: 10.1110/ps.8701

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    N-terminal contributions of the γ-subunit of fetal hemoglobin to its tetramer strength: Remote effects at subunit contacts

    Protein Science

    Volume 11, Issue 1, January 2002, Pages: 27–35, Takeshi Yagami, Barry T. Ballard, Julio Cesar Padovan, Brian T. Chait, Anthony M. Popowicz and James M. Manning

    Article first published online : 13 APR 2009, DOI: 10.1110/ps.30602

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    Analysis of the factors that stabilize a designed two-stranded antiparallel β-sheet

    Protein Science

    Volume 11, Issue 6, June 2002, Pages: 1492–1505, Juan F. Espinosa, Faisal A. Syud and Samuel H. Gellman

    Article first published online : 13 APR 2009, DOI: 10.1110/ps.4140102

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    Oligomerization state and supramolecular structure of the HIV-1 Vpu protein transmembrane segment in phospholipid bilayers

    Protein Science

    Volume 19, Issue 10, October 2010, Pages: 1877–1896, Jun-Xia Lu, Simon Sharpe, Rodolfo Ghirlando, Wai-Ming Yau and Robert Tycko

    Article first published online : 1 SEP 2010, DOI: 10.1002/pro.474

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    The Bacillus licheniformis BlaP β-lactamase as a model protein scaffold to study the insertion of protein fragments

    Protein Science

    Volume 16, Issue 10, October 2007, Pages: 2260–2271, Marylène Vandevenne, Patrice Filee, Natacha Scarafone, Benoît Cloes, Gilles Gaspard, Nursel Yilmaz, Mireille Dumoulin, Jean-Marie François, Jean-Marie Frère and Moreno Galleni

    Article first published online : 1 JAN 2009, DOI: 10.1110/ps.072912407

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    Characterization of N-linked oligosaccharides in chorion peroxidase of Aedes aegypti mosquito

    Protein Science

    Volume 14, Issue 9, September 2005, Pages: 2370–2386, Junsuo S. Li and Jianyong Li

    Article first published online : 1 JAN 2009, DOI: 10.1110/ps.051419105

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    Free energies of protein decoys provide insight into determinants of protein stability

    Protein Science

    Volume 10, Issue 12, December 2001, Pages: 2498–2506, Yury N. Vorobjev and Jan Hermans

    Article first published online : 31 DEC 2008, DOI: 10.1110/ps.15501

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    Structural and functional characterization of the interaction of the photosensitizing probe methylene blue with Torpedo californica acetylcholinesterase

    Protein Science

    Volume 21, Issue 8, August 2012, Pages: 1138–1152, Aviv Paz, Esther Roth, Yacov Ashani, Yechun Xu, Valery L. Shnyrov, Joel L. Sussman, Israel Silman and Lev Weiner

    Article first published online : 26 JUN 2012, DOI: 10.1002/pro.2101

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    A fast and accurate computational approach to protein ionization

    Protein Science

    Volume 17, Issue 11, November 2008, Pages: 1955–1970, Velin Z. Spassov and Lisa Yan

    Article first published online : 2 JAN 2009, DOI: 10.1110/ps.036335.108

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    HIV-1 protease molecular dynamics of a wild-type and of the V82F/I84V mutant: Possible contributions to drug resistance and a potential new target site for drugs

    Protein Science

    Volume 13, Issue 4, April 2004, Pages: 1108–1123, Alexander L. Perryman, Jung-Hsin Lin and J. Andrew McCammon

    Article first published online : 1 JAN 2009, DOI: 10.1110/ps.03468904

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    The enzymes of biotin dependent CO2 metabolism: What structures reveal about their reaction mechanisms

    Protein Science

    Volume 21, Issue 11, November 2012, Pages: 1597–1619, Grover L. Waldrop, Hazel M. Holden and Martin St. Maurice

    Article first published online : 16 OCT 2012, DOI: 10.1002/pro.2156

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    An accurate, residue-level, pair potential of mean force for folding and binding based on the distance-scaled, ideal-gas reference state

    Protein Science

    Volume 13, Issue 2, February 2004, Pages: 400–411, Chi Zhang, Song Liu, Hongyi Zhou and Yaoqi Zhou

    Article first published online : 1 JAN 2009, DOI: 10.1110/ps.03348304

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    Calorimetric and structural studies of the nitric oxide carrier S-nitrosoglutathione bound to human glutathione transferase P1-1

    Protein Science

    Volume 15, Issue 5, May 2006, Pages: 1093–1105, Ramiro Téllez-Sanz, Eleonora Cesareo, Marzia Nuccetelli, Ana M. Aguilera, Carmen Barón, Lorien J. Parker, Julian J. Adams, Craig J. Morton, Mario Lo Bello, Michael W. Parker and Luis García-Fuentes

    Article first published online : 1 JAN 2009, DOI: 10.1110/ps.052055206

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    Molecular dynamics simulations of the native and partially folded states of ubiquitin: Influence of methanol cosolvent, pH, and temperature on the protein structure and dynamics

    Protein Science

    Volume 16, Issue 6, June 2007, Pages: 1101–1118, David B. Kony, Philippe H. Hünenberger and Wilfred F. van Gunsteren

    Article first published online : 2 JAN 2009, DOI: 10.1110/ps.062323407

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    Insights into dimerization and four-helix bundle formation found by dissection of the dimer interface of the GrpE protein from Escherichia coli

    Protein Science

    Volume 12, Issue 6, June 2003, Pages: 1205–1215, Andrew F. Mehl, Luke D. Heskett, Sumesh S. Jain and Borries Demeler

    Article first published online : 1 JAN 2009, DOI: 10.1110/ps.0300803

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    Ideication of disulfide-linked peptides by isotope profiles produced by peptic digestion of proteins in 50% 18O water

    Protein Science

    Volume 10, Issue 11, November 2001, Pages: 2251–2271, Tristan P. Wallis, James J. Pitt and Jeffrey J. Gorman

    Article first published online : 31 DEC 2008, DOI: 10.1110/ps.15401