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There are 18899 results for: content related to: Modeling large regions in proteins: Applications to loops, termini, and folding

  1. 3Drefine: Consistent protein structure refinement by optimizing hydrogen bonding network and atomic-level energy minimization

    Proteins: Structure, Function, and Bioinformatics

    Volume 81, Issue 1, January 2013, Pages: 119–131, Debswapna Bhattacharya and Jianlin Cheng

    Article first published online : 26 SEP 2012, DOI: 10.1002/prot.24167

  2. CASP9 assessment of free modeling target predictions

    Proteins: Structure, Function, and Bioinformatics

    Volume 79, Issue S10, 2011, Pages: 59–73, Lisa Kinch, Shuo Yong Shi, Qian Cong, Hua Cheng, Yuxing Liao and Nick V. Grishin

    Article first published online : 14 OCT 2011, DOI: 10.1002/prot.23181

  3. Low mRNA expression of the apoptosis-related genes CASP3, CASP8, and FAS is associated with low induction treatment response in childhood acute lymphoblastic leukemia (ALL)

    Pediatric Blood & Cancer

    Volume 55, Issue 1, 15 July 2010, Pages: 100–107, Juliana F. Mata, Vanessa S. Silveira, Elvis C. Mateo, Maria A.A. Cortez, Rosane G.P. Queiroz, José Andrés Yunes, Maria Lúcia M. Lee, Sílvia R.C. Toledo, Antonio Sérgio Petrilli, Silvia R. Brandalise, Luiz G. Tone and Carlos A. Scrideli

    Article first published online : 15 MAR 2010, DOI: 10.1002/pbc.22463

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    An iterative self-refining and self-evaluating approach for protein model quality estimation

    Protein Science

    Volume 21, Issue 1, January 2012, Pages: 142–151, Zheng Wang and Jianlin Cheng

    Article first published online : 23 NOV 2011, DOI: 10.1002/pro.764

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    Influence of caspases 8 and 9 gene promoter polymorphism on prostate cancer susceptibility and early development of hormone refractory prostate cancer

    BJU International

    Volume 107, Issue 3, February 2011, Pages: 471–476, Pravin Kesarwani, Raju K. Mandal, Ruchir Maheshwari and Rama Devi Mittal

    Article first published online : 27 AUG 2010, DOI: 10.1111/j.1464-410X.2010.09533.x

  6. Evolutionary analyses of caspase-8 and its paralogs: Deep origins of the apoptotic signaling pathways

    BioEssays

    Volume 37, Issue 7, July 2015, Pages: 767–776, Kazuhiro Sakamaki, Kenichiro Imai, Kentaro Tomii and David J. Miller

    Article first published online : 22 MAY 2015, DOI: 10.1002/bies.201500010

  7. Model Quality Assessment Using a Statistical Program that Adopts a Side Chain Environment Viewpoint

    Introduction to Protein Structure Prediction: Methods and Algorithms

    Genki Terashi, Mayuko Takeda-Shitaka, Kazuhiko Kanou, Hideaki Umeyama, Pages: 299–321, 2010

    Published Online : 7 SEP 2010, DOI: 10.1002/9780470882207.ch14

  8. MUFOLD-WQA: A new selective consensus method for quality assessment in protein structure prediction

    Proteins: Structure, Function, and Bioinformatics

    Volume 79, Issue S10, 2011, Pages: 185–195, Qingguo Wang, Kittinun Vantasin, Dong Xu and Yi Shang

    Article first published online : 14 OCT 2011, DOI: 10.1002/prot.23185

  9. Caspase-8 polymorphisms and risk of gallbladder cancer in a Northern Indian population

    Molecular Carcinogenesis

    Volume 49, Issue 7, July 2010, Pages: 684–692, Kshitij Srivastava, Anvesha Srivastava and Balraj Mittal

    Article first published online : 19 MAY 2010, DOI: 10.1002/mc.20641

  10. Selective refinement and selection of near-native models in protein structure prediction

    Proteins: Structure, Function, and Bioinformatics

    Jiong Zhang, Bogdan Barz, Jingfen Zhang, Dong Xu and Ioan Kosztin

    Article first published online : 12 AUG 2015, DOI: 10.1002/prot.24866

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    Target domain definition and classification in CASP8

    Proteins: Structure, Function, and Bioinformatics

    Volume 77, Issue S9, 2009, Pages: 10–17, Michael L. Tress, Iakes Ezkurdia and Jane S. Richardson

    Article first published online : 9 JUN 2009, DOI: 10.1002/prot.22497

  12. Theoretical Analysis of Fas Ligand-Induced Apoptosis with an Ordinary Differential Equation Model

    Molecular Informatics

    Volume 31, Issue 11-12, December 2012, Pages: 793–807, Zhimin Shi, Yan Li, Zhihai Liu, Jun Mi and Renxiao Wang

    Article first published online : 30 OCT 2012, DOI: 10.1002/minf.201200044

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    Loss of caspase-8 in hepatocytes accelerates the onset of liver regeneration in mice through premature nuclear factor kappa B activation

    Hepatology

    Volume 58, Issue 5, November 2013, Pages: 1779–1789, Julia Freimuth, Jörg-Martin Bangen, Daniela Lambertz, Wei Hu, Yulia Alexandrowna Nevzorova, Roland Sonntag, Nikolaus Gassler, Dieter Riethmacher, Christian Trautwein and Christian Liedtke

    Article first published online : 6 AUG 2013, DOI: 10.1002/hep.26538

  14. CASP8 promoter polymorphism is associated with high-risk HPV types and abnormal cytology but not with cervical cancer

    Journal of Medical Virology

    Volume 83, Issue 4, April 2011, Pages: 630–636, Koushik Chatterjee, Anna-Lise Williamson, Margaret Hoffman and Collet Dandara

    Article first published online : 15 FEB 2011, DOI: 10.1002/jmv.22009

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    A novel function of caspase-8 in the regulation of androgen-receptor-driven gene expression

    The EMBO Journal

    Volume 26, Issue 1, January 10, 2007, Pages: 65–75, Wei Qi, Hong Wu, Lin Yang, Douglas D Boyd and Zhengxin Wang

    Article first published online : 14 DEC 2006, DOI: 10.1038/sj.emboj.7601483

  16. CASP8 −652 6N del and CASP8 IVS12-19G>A gene polymorphisms and susceptibility/prognosis of ESCC: A case control study in northern Indian population

    Journal of Surgical Oncology

    Volume 103, Issue 7, 1 June 2011, Pages: 716–723, Meenakshi Umar, Rohit Upadhyay, Shaleen Kumar, Uday Chand Ghoshal and Prof. Balraj Mittal

    Article first published online : 9 FEB 2011, DOI: 10.1002/jso.21881

  17. A multiple-template approach to protein threading

    Proteins: Structure, Function, and Bioinformatics

    Volume 79, Issue 6, June 2011, Pages: 1930–1939, Jian Peng and Jinbo Xu

    Article first published online : 4 APR 2011, DOI: 10.1002/prot.23016

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    CASP8 results in context of previous experiments

    Proteins: Structure, Function, and Bioinformatics

    Volume 77, Issue S9, 2009, Pages: 217–228, Andriy Kryshtafovych, Krzysztof Fidelis and John Moult

    Article first published online : 5 AUG 2009, DOI: 10.1002/prot.22562

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    The use of automatic tools and human expertise in template-based modeling of CASP8 target proteins

    Proteins: Structure, Function, and Bioinformatics

    Volume 77, Issue S9, 2009, Pages: 81–88, Česlovas Venclovas and Mindaugas Margelevičius

    Article first published online : 22 JUN 2009, DOI: 10.1002/prot.22515

  20. The emerging role of caspases in signal transduction as revealed by knock-out studies − not only apoptosis

    Signal Transduction

    Volume 1, Issue 1-2, November 2001, Pages: 51–65, Manuela Michalke, Christopher Stroh, Katerina Chlichlia, Anna Stepczynska, Malgorzata Mozoluk and Marek Los

    Article first published online : 7 NOV 2002, DOI: 10.1002/1615-4061(200111)1:1/2<51::AID-SITA51>3.0.CO;2-F