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There are 26661 results for: content related to: Comparison of sequence and structure alignments for protein domains

  1. Implications of structural genomics target selection strategies: Pfam5000, whole genome, and random approaches

    Proteins: Structure, Function, and Bioinformatics

    Volume 58, Issue 1, 1 January 2005, Pages: 166–179, John-Marc Chandonia and Steven E. Brenner

    Version of Record online : 1 NOV 2004, DOI: 10.1002/prot.20298

  2. Identifying Protein Domains with the Pfam Database

    Unit

    Current Protocols in Bioinformatics

    2:2.5.1–2.5.17

    Penny Coggill, Robert D. Finn and Alex Bateman

    Published Online : 1 SEP 2008, DOI: 10.1002/0471250953.bi0205s23

  3. You have free access to this content
    A classification of disulfide patterns and its relationship to protein structure and function

    Protein Science

    Volume 13, Issue 8, August 2004, Pages: 2045–2058, Abhas Gupta, Herman W.T. Van Vlijmen and Juswinder Singh

    Version of Record online : 1 JAN 2009, DOI: 10.1110/ps.04613004

  4. You have free access to this content
    Structural similarity to link sequence space: New potential superfamilies and implications for structural genomics

    Protein Science

    Volume 11, Issue 5, May 2002, Pages: 1101–1116, Patrick Aloy, Baldomero Oliva, Enrique Querol, Francesc X. Aviles and Robert B. Russell

    Version of Record online : 13 APR 2009, DOI: 10.1110/ps.3950102

  5. Influence of conservation on calculations of amino acid covariance in multiple sequence alignments

    Proteins: Structure, Function, and Bioinformatics

    Volume 56, Issue 2, 1 August 2004, Pages: 211–221, Anthony A. Fodor and Richard W. Aldrich

    Version of Record online : 14 MAY 2004, DOI: 10.1002/prot.20098

  6. Structural genomics reveals EVE as a new ASCH/PUA-related domain

    Proteins: Structure, Function, and Bioinformatics

    Volume 75, Issue 3, 15 May 2009, Pages: 760–773, Claudia Bertonati, Marco Punta, Markus Fischer, Guy Yachdav, Farhad Forouhar, Weihong Zhou, Alexander P. Kuzin, Jayaraman Seetharaman, Mariam Abashidze, Theresa A. Ramelot, Michael A. Kennedy, John R. Cort, Adam Belachew, John F. Hunt, Liang Tong, Gaetano T. Montelione and Burkhard Rost

    Version of Record online : 30 SEP 2008, DOI: 10.1002/prot.22287

  7. Rapid automatic detection and alignment of repeats in protein sequences

    Proteins: Structure, Function, and Bioinformatics

    Volume 41, Issue 2, 1 November 2000, Pages: 224–237, Andreas Heger and Liisa Holm

    Version of Record online : 24 AUG 2000, DOI: 10.1002/1097-0134(20001101)41:2<224::AID-PROT70>3.0.CO;2-Z

  8. Computational protein design as a tool for fold recognition

    Proteins: Structure, Function, and Bioinformatics

    Volume 77, Issue 1, October 2009, Pages: 139–158, Marcel Schmidt am Busch, David Mignon and Thomas Simonson

    Version of Record online : 24 MAR 2009, DOI: 10.1002/prot.22426

  9. Defining the fold space of membrane proteins: The CAMPS database

    Proteins: Structure, Function, and Bioinformatics

    Volume 64, Issue 4, 1 September 2006, Pages: 906–922, Antonio J. Martin-Galiano and Dmitrij Frishman

    Version of Record online : 26 JUN 2006, DOI: 10.1002/prot.21081

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    The PAS fold

    European Journal of Biochemistry

    Volume 271, Issue 6, March 2004, Pages: 1198–1208, Marco H. Hefti, Kees-Jan Françoijs, Sacco C. de Vries, Ray Dixon and Jacques Vervoort

    Version of Record online : 1 MAR 2004, DOI: 10.1111/j.1432-1033.2004.04023.x

  11. Pfam: the protein families database

    Standard Article

    Encyclopedia of Genetics, Genomics, Proteomics and Bioinformatics

    Robert D. Finn

    Published Online : 15 APR 2005, DOI: 10.1002/047001153X.g306303

  12. Identification and distribution of protein families in 120 completed genomes using Gene3D

    Proteins: Structure, Function, and Bioinformatics

    Volume 59, Issue 3, 15 May 2005, Pages: 603–615, David Lee, Alastair Grant, Russell L. Marsden and Christine Orengo

    Version of Record online : 14 MAR 2005, DOI: 10.1002/prot.20409

  13. Expansion of the APC superfamily of secondary carriers

    Proteins: Structure, Function, and Bioinformatics

    Volume 82, Issue 10, October 2014, Pages: 2797–2811, Ake Vastermark, Simon Wollwage, Michael E. Houle, Rita Rio and Milton H. Saier Jr.

    Version of Record online : 31 JUL 2014, DOI: 10.1002/prot.24643

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    Modules, multidomain proteins and organismic complexity

    The FEBS Journal

    Volume 272, Issue 19, October 2005, Pages: 5064–5078, Hedvig Tordai, Alinda Nagy, Krisztina Farkas, László Bányai and László Patthy

    Version of Record online : 13 SEP 2005, DOI: 10.1111/j.1742-4658.2005.04917.x

  15. CHOP proteins into structural domain-like fragments

    Proteins: Structure, Function, and Bioinformatics

    Volume 55, Issue 3, 15 May 2004, Pages: 678–688, Jinfeng Liu and Burkhard Rost

    Version of Record online : 1 APR 2004, DOI: 10.1002/prot.20095

  16. Classification of proteins with shared motifs and internal repeats in the ECOD database

    Protein Science

    Volume 25, Issue 7, July 2016, Pages: 1188–1203, R. Dustin Schaeffer, Lisa N. Kinch, Yuxing Liao and Nick V. Grishin

    Version of Record online : 21 FEB 2016, DOI: 10.1002/pro.2893

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    Structural similarity to bridge sequence space: Finding new families on the bridges

    Protein Science

    Volume 14, Issue 5, May 2005, Pages: 1305–1314, Parantu K. Shah, Patrick Aloy, Peer Bork and Robert B. Russell

    Version of Record online : 1 JAN 2009, DOI: 10.1110/ps.041187405

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    The transporter–opsin–G protein-coupled receptor (TOG) superfamily

    The FEBS Journal

    Volume 280, Issue 22, November 2013, Pages: 5780–5800, Daniel C. Yee, Maksim A. Shlykov, Åke Västermark, Vamsee S. Reddy, Sumit Arora, Eric I. Sun and Milton H. Saier Jr

    Version of Record online : 23 SEP 2013, DOI: 10.1111/febs.12499

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    Predicting the dry deposition of aerosol-sized particles using layer-resolved canopy and pipe flow analogy models: Role of turbophoresis

    Journal of Geophysical Research: Atmospheres (1984–2012)

    Volume 115, Issue D12, 27 June 2010, G. G. Katul, T. Grönholm, S. Launiainen and T. Vesala

    Version of Record online : 17 JUN 2010, DOI: 10.1029/2009JD012853

  20. Internal organization of large protein families: Relationship between the sequence, structure, and function-based clustering

    Proteins: Structure, Function, and Bioinformatics

    Volume 79, Issue 8, August 2011, Pages: 2389–2402, Xiao-Hui Cai, Lukasz Jaroszewski, John Wooley and Adam Godzik

    Version of Record online : 31 MAY 2011, DOI: 10.1002/prot.23049