Search Results

There are 4801825 results for: content related to: Energy landscape of a small peptide revealed by dihedral angle principal component analysis

  1. Exploring the Energy Landscape of Small Peptides and Proteins by Molecular Dynamics Simulations

    Protein and Peptide Folding, Misfolding, and Non-Folding

    Gerhard Stock, Abhinav Jain, Laura Riccardi, Phuong H. Nguyen, Pages: 55–77, 2012

    Published Online : 22 FEB 2012, DOI: 10.1002/9781118183373.ch2

  2. You have free access to this content
    Water and molecular chaperones act as weak links of protein folding networks: Energy landscape and punctuated equilibrium changes point towards a game theory of proteins

    FEBS Letters

    Volume 579, Issue 11, April 25, 2005, Pages: 2254–2260, István A. Kovács, Máté S. Szalay and Peter Csermely

    Version of Record online : 2 APR 2005, DOI: 10.1016/j.febslet.2005.03.056

  3. Calculation of free energy landscapes: A histogram reweighted metadynamics approach

    Journal of Computational Chemistry

    Volume 32, Issue 10, 30 July 2011, Pages: 2084–2096, Jens Smiatek and Andreas Heuer

    Version of Record online : 15 APR 2011, DOI: 10.1002/jcc.21790

  4. Free energy landscape of a biomolecule in dihedral principal component space: Sampling convergence and correspondence between structures and minima

    Proteins: Structure, Function, and Bioinformatics

    Volume 67, Issue 3, 15 May 2007, Pages: 569–578, Gia G. Maisuradze and David M. Leitner

    Version of Record online : 8 MAR 2007, DOI: 10.1002/prot.21344

  5. You have free access to this content
    Energy landscape and dynamics of the β-hairpin G peptide and its isomers: Topology and sequences

    Protein Science

    Volume 12, Issue 9, September 2003, Pages: 1882–1893, Buyong Ma and Ruth Nussinov

    Version of Record online : 1 JAN 2009, DOI: 10.1110/ps.0306103

  6. Complexity of free energy landscapes of peptides revealed by nonlinear principal component analysis

    Proteins: Structure, Function, and Bioinformatics

    Volume 65, Issue 4, 1 December 2006, Pages: 898–913, Phuong H. Nguyen

    Version of Record online : 10 OCT 2006, DOI: 10.1002/prot.21185

  7. Energy Landscapes: From Clusters to Biomolecules

    Advances in Chemical Physics, Volume 115

    David J. Wales, Jonathan P. K. Doye, Mark A. Miller, Paul N. Mortenson, Tiffany R. Walsh, Pages: 1–111, 2007

    Published Online : 14 MAR 2007, DOI: 10.1002/9780470141748.ch1

  8. Funnels, pathways, and the energy landscape of protein folding: A synthesis

    Proteins: Structure, Function, and Bioinformatics

    Volume 21, Issue 3, March 1995, Pages: 167–195, Joseph D. Bryngelson, José Nelson Onuchic, Nicholas D. Socci and Peter G. Wolynes

    Version of Record online : 3 FEB 2004, DOI: 10.1002/prot.340210302

  9. You have free access to this content
    Comment on: “Energy landscape of a small peptide revealed by dihedral angle principal component analysis”

    Proteins: Structure, Function, and Bioinformatics

    Volume 64, Issue 3, 15 August 2006, Pages: 795–797, Konrad Hinsen

    Version of Record online : 2 FEB 2006, DOI: 10.1002/prot.20900

  10. Energy landscape roughness of the streptavidin–biotin interaction

    Journal of Molecular Recognition

    Volume 20, Issue 6, November/December 2007, Pages: 495–501, Félix Rico and Vincent T. Moy

    Version of Record online : 27 SEP 2007, DOI: 10.1002/jmr.841

  11. Multidimensional Energy Landscapes in Single-Molecule Biophysics

    Single-Molecule Biophysics: Experiment and Theory, Volume 146

    Akinori Baba, Tamiki Komatsuzaki, Pages: 299–327, 2011

    Published Online : 22 NOV 2011, DOI: 10.1002/9781118131374.ch11

  12. Reply to the comment on “Energy landscape of a small peptide revealed by dihedral angle principal component analysis”

    Proteins: Structure, Function, and Bioinformatics

    Volume 64, Issue 3, 15 August 2006, Pages: 798–799, Yuguang Mu, Phuong Nguyen and Gerhard Stock

    Version of Record online : 2 JUN 2006, DOI: 10.1002/prot.21038

  13. You have free access to this content
    Protein folding – simplicity in complexity

    Annalen der Physik

    Volume 524, Issue 8, August 2012, Pages: 379–391, M.M. Lin and A.H. Zewail

    Version of Record online : 23 JUL 2012, DOI: 10.1002/andp.201200501

  14. Exploring peptide energy landscapes: A test of force fields and implicit solvent models

    Proteins: Structure, Function, and Bioinformatics

    Volume 57, Issue 4, 1 December 2004, Pages: 665–677, Peter J. Steinbach

    Version of Record online : 12 AUG 2004, DOI: 10.1002/prot.20247

  15. Cooperative folding mechanism of a β-hairpin peptide studied by a multicanonical replica-exchange molecular dynamics simulation

    Proteins: Structure, Function, and Bioinformatics

    Volume 66, Issue 4, March 2007, Pages: 846–859, Takao Yoda, Yuji Sugita and Yuko Okamoto

    Version of Record online : 15 DEC 2006, DOI: 10.1002/prot.21264

  16. You have free access to this content
    A simple model for polyproline II structure in unfolded states of alanine-based peptides

    Protein Science

    Volume 11, Issue 10, October 2002, Pages: 2437–2455, Rohit V. Pappu and George D. Rose

    Version of Record online : 13 APR 2009, DOI: 10.1110/ps.0217402

  17. Generation and characterization of low-energy structures in atomic clusters

    Journal of Computational Chemistry

    Volume 31, Issue 7, May 2010, Pages: 1495–1503, J. M. C. Marques, A. A. C. C. Pais and P. E. Abreu

    Version of Record online : 30 OCT 2009, DOI: 10.1002/jcc.21436

  18. You have free access to this content
    Free-energy landscape of a chameleon sequence in explicit water and its inherent α/β bifacial property

    Protein Science

    Volume 12, Issue 11, November 2003, Pages: 2542–2548, Kazuyoshi Ikeda and Junichi Higo

    Version of Record online : 1 JAN 2009, DOI: 10.1110/ps.03143803

  19. Exploring the relationship between funneled energy landscapes and two-state protein folding

    Proteins: Structure, Function, and Bioinformatics

    Volume 65, Issue 1, 1 October 2006, Pages: 153–163, Lars Konermann

    Version of Record online : 7 AUG 2006, DOI: 10.1002/prot.21080

  20. Atomic mobility in strained glassy polymers: The role of fold catastrophes on the potential energy surface

    Journal of Polymer Science Part B: Polymer Physics

    Volume 50, Issue 24, 15 December 2012, Pages: 1733–1739, Yongchul G. Chung and Daniel J. Lacks

    Version of Record online : 11 SEP 2012, DOI: 10.1002/polb.23166