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There are 13362 results for: content related to: Free energy landscape of a biomolecule in dihedral principal component space: Sampling convergence and correspondence between structures and minima

  1. Novel approach for α-helical topology prediction in globular proteins: Generation of interhelical restraints

    Proteins: Structure, Function, and Bioinformatics

    Volume 65, Issue 4, 1 December 2006, Pages: 930–952, S. R. McAllister, B. E. Mickus, J. L. Klepeis and C. A. Floudas

    Article first published online : 6 OCT 2006, DOI: 10.1002/prot.21095

  2. The geometry of α-sheet: Implications for its possible function as amyloid precursor in proteins

    Proteins: Structure, Function, and Bioinformatics

    Volume 71, Issue 1, April 2008, Pages: 415–425, Steven Hayward and E. James Milner-White

    Article first published online : 23 OCT 2007, DOI: 10.1002/prot.21717

  3. Modeling protein density of states: Additive hydrophobic effects are insufficient for calorimetric two-state cooperativity

    Proteins: Structure, Function, and Bioinformatics

    Volume 40, Issue 4, 1 September 2000, Pages: 543–571, Hue Sun Chan

    Article first published online : 28 JUN 2000, DOI: 10.1002/1097-0134(20000901)40:4<543::AID-PROT20>3.0.CO;2-O

  4. Detection of multiscale pockets on protein surfaces using mathematical morphology

    Proteins: Structure, Function, and Bioinformatics

    Volume 78, Issue 5, April 2010, Pages: 1195–1211, Takeshi Kawabata

    Article first published online : 16 OCT 2009, DOI: 10.1002/prot.22639

  5. Statistical and conformational analysis of the electron density of protein side chains

    Proteins: Structure, Function, and Bioinformatics

    Volume 66, Issue 2, 1 February 2007, Pages: 279–303, Maxim V. Shapovalov and Roland L. Dunbrack Jr.

    Article first published online : 1 NOV 2006, DOI: 10.1002/prot.21150

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    Computational basis of knowledge-based conformational probabilities derived from local- and long-range interactions in proteins

    Proteins: Structure, Function, and Bioinformatics

    Volume 66, Issue 1, January 2007, Pages: 29–40, Lerzan Ormeci, Attila Gursoy, Guzin Tunca and Burak Erman

    Article first published online : 12 OCT 2006, DOI: 10.1002/prot.21206

  7. Information and discrimination in pairwise contact potentials

    Proteins: Structure, Function, and Bioinformatics

    Volume 71, Issue 3, 15 May 2008, Pages: 1071–1087, Armando D. Solis and S. Rackovsky

    Article first published online : 14 NOV 2007, DOI: 10.1002/prot.21733

  8. Protein conformational transitions explored by mixed elastic network models

    Proteins: Structure, Function, and Bioinformatics

    Volume 69, Issue 1, October 2007, Pages: 43–57, Wenjun Zheng, Bernard R. Brooks and Gerhard Hummer

    Article first published online : 27 JUN 2007, DOI: 10.1002/prot.21465

  9. Measures for the assessment of fuzzy predictions of protein secondary structure

    Proteins: Structure, Function, and Bioinformatics

    Volume 65, Issue 2, 1 November 2006, Pages: 453–462, Julian Lee

    Article first published online : 31 AUG 2006, DOI: 10.1002/prot.21164

  10. Mechanism of induced folding: Both folding before binding and binding before folding can be realized in staphylococcal nuclease mutants

    Proteins: Structure, Function, and Bioinformatics

    Volume 72, Issue 3, 15 August 2008, Pages: 837–847, Masayoshi Onitsuka, Hironari Kamikubo, Yoichi Yamazaki and Mikio Kataoka

    Article first published online : 7 FEB 2008, DOI: 10.1002/prot.21978

  11. Interaction cutoff effect on ruggedness of protein–protein energy landscape

    Proteins: Structure, Function, and Bioinformatics

    Volume 70, Issue 4, March 2008, Pages: 1498–1505, Anatoly M. Ruvinsky and Ilya A. Vakser

    Article first published online : 1 OCT 2007, DOI: 10.1002/prot.21644

  12. FURSMASA: A new approach to rapid scoring functions that uses a MD-averaged potential energy grid and a solvent-accessible surface area term with parameters GA fit to experimental data

    Proteins: Structure, Function, and Bioinformatics

    Volume 71, Issue 3, 15 May 2008, Pages: 1519–1538, David A. Pearlman, B. Govinda Rao and Paul Charifson

    Article first published online : 25 FEB 2008, DOI: 10.1002/prot.21991

  13. A novel high resolution Cα[BOND]Cα distance dependent force field based on a high quality decoy set

    Proteins: Structure, Function, and Bioinformatics

    Volume 65, Issue 3, 15 November 2006, Pages: 726–741, R. Rajgaria, S. R. McAllister and C. A. Floudas

    Article first published online : 15 SEP 2006, DOI: 10.1002/prot.21149

  14. The helix–coil transition revisited

    Proteins: Structure, Function, and Bioinformatics

    Volume 69, Issue 1, October 2007, Pages: 58–68, Yantao Chen, Yaoqi Zhou and Jiandong Ding

    Article first published online : 27 JUN 2007, DOI: 10.1002/prot.21492

  15. Local interactions in protein folding determined through an inverse folding model

    Proteins: Structure, Function, and Bioinformatics

    Volume 71, Issue 1, April 2008, Pages: 278–299, Ugo Bastolla, Markus Porto and Angel R. Ortíz

    Article first published online : 11 OCT 2007, DOI: 10.1002/prot.21730

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    Multiscale simulations of protein landscapes: Using coarse-grained models as reference potentials to full explicit models

    Proteins: Structure, Function, and Bioinformatics

    Volume 78, Issue 5, April 2010, Pages: 1212–1227, Benjamin M. Messer, Maite Roca, Zhen T. Chu, Spyridon Vicatos, Alexandra Vardi Kilshtain and Arieh Warshel

    Article first published online : 16 OCT 2009, DOI: 10.1002/prot.22640

  17. Validating the vitality strategy for fighting drug resistance

    Proteins: Structure, Function, and Bioinformatics

    Volume 80, Issue 4, April 2012, Pages: 1110–1122, Nidhi Singh, Maria P. Frushicheva and Arieh Warshel

    Article first published online : 31 JAN 2012, DOI: 10.1002/prot.24012

  18. Interactions of macromolecules with salt ions: An electrostatic theory for the Hofmeister effect

    Proteins: Structure, Function, and Bioinformatics

    Volume 61, Issue 1, 1 October 2005, Pages: 69–78, Huan-Xiang Zhou

    Article first published online : 25 JUL 2005, DOI: 10.1002/prot.20500

  19. Conformational selection and induced changes along the catalytic cycle of Escherichia coli dihydrofolate reductase

    Proteins: Structure, Function, and Bioinformatics

    Volume 80, Issue 10, October 2012, Pages: 2369–2383, Thomas R. Weikl and David D. Boehr

    Article first published online : 3 JUL 2012, DOI: 10.1002/prot.24123

  20. Surface hydrophobic groups, stability, and flip-flopping in lattice proteins

    Proteins: Structure, Function, and Bioinformatics

    Volume 66, Issue 2, 1 February 2007, Pages: 321–341, Alexander A. Rashin and Abraham H. L. Rashin

    Article first published online : 9 NOV 2006, DOI: 10.1002/prot.21169