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There are 32204 results for: content related to: Crystal structure of QueC from Bacillus subtilis : An enzyme involved in preQ 1 biosynthesis

  1. Detection of multiscale pockets on protein surfaces using mathematical morphology

    Proteins: Structure, Function, and Bioinformatics

    Volume 78, Issue 5, April 2010, Pages: 1195–1211, Takeshi Kawabata

    Article first published online : 16 OCT 2009, DOI: 10.1002/prot.22639

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    Multiscale simulations of protein landscapes: Using coarse-grained models as reference potentials to full explicit models

    Proteins: Structure, Function, and Bioinformatics

    Volume 78, Issue 5, April 2010, Pages: 1212–1227, Benjamin M. Messer, Maite Roca, Zhen T. Chu, Spyridon Vicatos, Alexandra Vardi Kilshtain and Arieh Warshel

    Article first published online : 16 OCT 2009, DOI: 10.1002/prot.22640

  3. Iterative cluster-NMA: A tool for generating conformational transitions in proteins

    Proteins: Structure, Function, and Bioinformatics

    Volume 74, Issue 3, 15 February 2009, Pages: 760–776, Adam D. Schuyler, Robert L. Jernigan, Pradman K. Qasba, Boopathy Ramakrishnan and Gregory S. Chirikjian

    Article first published online : 19 AUG 2008, DOI: 10.1002/prot.22200

  4. The response of type three secretion system needle proteins MxiHΔ5, BsaLΔ5, and PrgIΔ5 to temperature and pH

    Proteins: Structure, Function, and Bioinformatics

    Volume 73, Issue 3, 15 November 2008, Pages: 632–643, Brooke S. Barrett, Wendy L. Picking, William D. Picking and C. Russell Middaugh

    Article first published online : 19 MAY 2008, DOI: 10.1002/prot.22085

  5. Effective connectivity profile: A structural representation that evidences the relationship between protein structures and sequences

    Proteins: Structure, Function, and Bioinformatics

    Volume 73, Issue 4, December 2008, Pages: 872–888, Ugo Bastolla, Angel R. Ortíz, Markus Porto and Florian Teichert

    Article first published online : 5 JUN 2008, DOI: 10.1002/prot.22113

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    Improved prediction of protein side-chain conformations with SCWRL4

    Proteins: Structure, Function, and Bioinformatics

    Volume 77, Issue 4, December 2009, Pages: 778–795, Georgii G. Krivov, Maxim V. Shapovalov and Roland L. Dunbrack Jr.

    Article first published online : 29 MAY 2009, DOI: 10.1002/prot.22488

  7. Towards accurate residue–residue hydrophobic contact prediction for α helical proteins via integer linear optimization

    Proteins: Structure, Function, and Bioinformatics

    Volume 74, Issue 4, March 2009, Pages: 929–947, R. Rajgaria, S. R. McAllister and C. A. Floudas

    Article first published online : 2 SEP 2008, DOI: 10.1002/prot.22202

  8. Information-theoretic analysis of the reference state in contact potentials used for protein structure prediction

    Proteins: Structure, Function, and Bioinformatics

    Volume 78, Issue 6, 1 May 2010, Pages: 1382–1397, Armando D. Solis and Shalom R. Rackovsky

    Article first published online : 6 NOV 2009, DOI: 10.1002/prot.22652

  9. Contact prediction for beta and alpha-beta proteins using integer linear optimization and its impact on the first principles 3D structure prediction method ASTRO-FOLD

    Proteins: Structure, Function, and Bioinformatics

    Volume 78, Issue 8, June 2010, Pages: 1825–1846, R. Rajgaria, Y. Wei and C. A. Floudas

    Article first published online : 1 FEB 2010, DOI: 10.1002/prot.22696

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    Selected-fit versus induced-fit protein binding: Kinetic differences and mutational analysis

    Proteins: Structure, Function, and Bioinformatics

    Volume 75, Issue 1, April 2009, Pages: 104–110, Thomas R. Weikl and Carola von Deuster

    Article first published online : 17 SEP 2008, DOI: 10.1002/prot.22223

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    Protonate3D: Assignment of ionization states and hydrogen coordinates to macromolecular structures

    Proteins: Structure, Function, and Bioinformatics

    Volume 75, Issue 1, April 2009, Pages: 187–205, Paul Labute

    Article first published online : 2 SEP 2008, DOI: 10.1002/prot.22234

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    De novo backbone scaffolds for protein design

    Proteins: Structure, Function, and Bioinformatics

    Volume 78, Issue 5, April 2010, Pages: 1311–1325, James T. MacDonald, Katarzyna Maksimiak, Michael I. Sadowski and William R. Taylor

    Article first published online : 5 NOV 2009, DOI: 10.1002/prot.22651

  13. Analysis of Ca2+/Mg2+ selectivity in α-lactalbumin and Ca2+-binding lysozyme reveals a distinct Mg2+-specific site in lysozyme

    Proteins: Structure, Function, and Bioinformatics

    Volume 78, Issue 12, September 2010, Pages: 2609–2624, Sergei E. Permyakov, Tatyana I. Khokhlova, Vladimir N. Uversky and Eugene A. Permyakov

    Article first published online : 28 MAY 2010, DOI: 10.1002/prot.22776

  14. Effect of using suboptimal alignments in template-based protein structure prediction

    Proteins: Structure, Function, and Bioinformatics

    Volume 79, Issue 1, January 2011, Pages: 315–334, Hao Chen and Daisuke Kihara

    Article first published online : 5 NOV 2010, DOI: 10.1002/prot.22885

  15. i-Patch: Interprotein contact prediction using local network information

    Proteins: Structure, Function, and Bioinformatics

    Volume 78, Issue 13, October 2010, Pages: 2781–2797, Rebecca Hamer, Qiang Luo, Judith P. Armitage, Gesine Reinert and Charlotte M. Deane

    Article first published online : 10 JUN 2010, DOI: 10.1002/prot.22792

  16. Absolute quality evaluation of protein model structures using statistical potentials with respect to the native and reference states

    Proteins: Structure, Function, and Bioinformatics

    Volume 79, Issue 5, May 2011, Pages: 1550–1563, Matsuyuki Shirota, Takashi Ishida and Kengo Kinoshita

    Article first published online : 1 MAR 2011, DOI: 10.1002/prot.22982

  17. Accounting for conformational entropy in predicting binding free energies of protein-protein interactions

    Proteins: Structure, Function, and Bioinformatics

    Volume 79, Issue 2, February 2011, Pages: 444–462, Hetunandan Kamisetty, Arvind Ramanathan, Chris Bailey-Kellogg and Christopher James Langmead

    Article first published online : 30 NOV 2010, DOI: 10.1002/prot.22894

  18. Real-time ligand binding pocket database search using local surface descriptors

    Proteins: Structure, Function, and Bioinformatics

    Volume 78, Issue 9, July 2010, Pages: 2007–2028, Rayan Chikhi, Lee Sael and Daisuke Kihara

    Article first published online : 18 MAR 2010, DOI: 10.1002/prot.22715

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    Very fast prediction and rationalization of pKa values for protein–ligand complexes

    Proteins: Structure, Function, and Bioinformatics

    Volume 73, Issue 3, 15 November 2008, Pages: 765–783, Delphine C. Bas, David M. Rogers and Jan H. Jensen

    Article first published online : 22 MAY 2008, DOI: 10.1002/prot.22102

  20. Molecular dynamics simulation of the acidic compact state of apomyoglobin from yellowfin tuna

    Proteins: Structure, Function, and Bioinformatics

    Volume 74, Issue 2, 1 February 2009, Pages: 273–290, Ettore Bismuto, Emiddio Di Maggio, Stefan Pleus, Martin Sikor, Carlheinz Röcker, G. Ulrich Nienhaus and Don C. Lamb

    Article first published online : 10 JUL 2008, DOI: 10.1002/prot.22149