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There are 16028 results for: content related to: Fluctuations of backbone torsion angles obtained from NMR-determined structures and their prediction

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    Multiscale simulations of protein landscapes: Using coarse-grained models as reference potentials to full explicit models

    Proteins: Structure, Function, and Bioinformatics

    Volume 78, Issue 5, April 2010, Pages: 1212–1227, Benjamin M. Messer, Maite Roca, Zhen T. Chu, Spyridon Vicatos, Alexandra Vardi Kilshtain and Arieh Warshel

    Article first published online : 16 OCT 2009, DOI: 10.1002/prot.22640

  2. Iterative cluster-NMA: A tool for generating conformational transitions in proteins

    Proteins: Structure, Function, and Bioinformatics

    Volume 74, Issue 3, 15 February 2009, Pages: 760–776, Adam D. Schuyler, Robert L. Jernigan, Pradman K. Qasba, Boopathy Ramakrishnan and Gregory S. Chirikjian

    Article first published online : 19 AUG 2008, DOI: 10.1002/prot.22200

  3. Effective connectivity profile: A structural representation that evidences the relationship between protein structures and sequences

    Proteins: Structure, Function, and Bioinformatics

    Volume 73, Issue 4, December 2008, Pages: 872–888, Ugo Bastolla, Angel R. Ortíz, Markus Porto and Florian Teichert

    Article first published online : 5 JUN 2008, DOI: 10.1002/prot.22113

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    Improved prediction of protein side-chain conformations with SCWRL4

    Proteins: Structure, Function, and Bioinformatics

    Volume 77, Issue 4, December 2009, Pages: 778–795, Georgii G. Krivov, Maxim V. Shapovalov and Roland L. Dunbrack Jr.

    Article first published online : 29 MAY 2009, DOI: 10.1002/prot.22488

  5. Information-theoretic analysis of the reference state in contact potentials used for protein structure prediction

    Proteins: Structure, Function, and Bioinformatics

    Volume 78, Issue 6, 1 May 2010, Pages: 1382–1397, Armando D. Solis and Shalom R. Rackovsky

    Article first published online : 6 NOV 2009, DOI: 10.1002/prot.22652

  6. Real-time ligand binding pocket database search using local surface descriptors

    Proteins: Structure, Function, and Bioinformatics

    Volume 78, Issue 9, July 2010, Pages: 2007–2028, Rayan Chikhi, Lee Sael and Daisuke Kihara

    Article first published online : 18 MAR 2010, DOI: 10.1002/prot.22715

  7. Modeling protein density of states: Additive hydrophobic effects are insufficient for calorimetric two-state cooperativity

    Proteins: Structure, Function, and Bioinformatics

    Volume 40, Issue 4, 1 September 2000, Pages: 543–571, Hue Sun Chan

    Article first published online : 28 JUN 2000, DOI: 10.1002/1097-0134(20000901)40:4<543::AID-PROT20>3.0.CO;2-O

  8. i-Patch: Interprotein contact prediction using local network information

    Proteins: Structure, Function, and Bioinformatics

    Volume 78, Issue 13, October 2010, Pages: 2781–2797, Rebecca Hamer, Qiang Luo, Judith P. Armitage, Gesine Reinert and Charlotte M. Deane

    Article first published online : 10 JUN 2010, DOI: 10.1002/prot.22792

  9. Accounting for conformational entropy in predicting binding free energies of protein-protein interactions

    Proteins: Structure, Function, and Bioinformatics

    Volume 79, Issue 2, February 2011, Pages: 444–462, Hetunandan Kamisetty, Arvind Ramanathan, Chris Bailey-Kellogg and Christopher James Langmead

    Article first published online : 30 NOV 2010, DOI: 10.1002/prot.22894

  10. Detection of multiscale pockets on protein surfaces using mathematical morphology

    Proteins: Structure, Function, and Bioinformatics

    Volume 78, Issue 5, April 2010, Pages: 1195–1211, Takeshi Kawabata

    Article first published online : 16 OCT 2009, DOI: 10.1002/prot.22639

  11. Accurate prediction for atomic-level protein design and its application in diversifying the near-optimal sequence space

    Proteins: Structure, Function, and Bioinformatics

    Volume 75, Issue 3, 15 May 2009, Pages: 682–705, Menachem Fromer and Chen Yanover

    Article first published online : 25 SEP 2008, DOI: 10.1002/prot.22280

  12. Effect of using suboptimal alignments in template-based protein structure prediction

    Proteins: Structure, Function, and Bioinformatics

    Volume 79, Issue 1, January 2011, Pages: 315–334, Hao Chen and Daisuke Kihara

    Article first published online : 5 NOV 2010, DOI: 10.1002/prot.22885

  13. Graphical models of protein–protein interaction specificity from correlated mutations and interaction data

    Proteins: Structure, Function, and Bioinformatics

    Volume 76, Issue 4, September 2009, Pages: 911–929, John Thomas, Naren Ramakrishnan and Chris Bailey-Kellogg

    Article first published online : 2 FEB 2009, DOI: 10.1002/prot.22398

  14. Towards accurate residue–residue hydrophobic contact prediction for α helical proteins via integer linear optimization

    Proteins: Structure, Function, and Bioinformatics

    Volume 74, Issue 4, March 2009, Pages: 929–947, R. Rajgaria, S. R. McAllister and C. A. Floudas

    Article first published online : 2 SEP 2008, DOI: 10.1002/prot.22202

  15. Absolute quality evaluation of protein model structures using statistical potentials with respect to the native and reference states

    Proteins: Structure, Function, and Bioinformatics

    Volume 79, Issue 5, May 2011, Pages: 1550–1563, Matsuyuki Shirota, Takashi Ishida and Kengo Kinoshita

    Article first published online : 1 MAR 2011, DOI: 10.1002/prot.22982

  16. A coarse-grained potential for fold recognition and molecular dynamics simulations of proteins

    Proteins: Structure, Function, and Bioinformatics

    Volume 76, Issue 4, September 2009, Pages: 822–836, Peter Májek and Ron Elber

    Article first published online : 2 FEB 2009, DOI: 10.1002/prot.22388

  17. Conformational selection and induced changes along the catalytic cycle of Escherichia coli dihydrofolate reductase

    Proteins: Structure, Function, and Bioinformatics

    Volume 80, Issue 10, October 2012, Pages: 2369–2383, Thomas R. Weikl and David D. Boehr

    Article first published online : 3 JUL 2012, DOI: 10.1002/prot.24123

  18. Some recommendations for the practitioner to improve the precision of experimentally determined protein folding rates and ϕ values

    Proteins: Structure, Function, and Bioinformatics

    Volume 74, Issue 2, 1 February 2009, Pages: 461–474, Ingo Ruczinski and Kevin W. Plaxco

    Article first published online : 24 JUL 2008, DOI: 10.1002/prot.22155

  19. Design of multispecific protein sequences using probabilistic graphical modeling

    Proteins: Structure, Function, and Bioinformatics

    Volume 78, Issue 3, 15 February 2010, Pages: 530–547, Menachem Fromer, Chen Yanover and Michal Linial

    Article first published online : 12 AUG 2009, DOI: 10.1002/prot.22575

  20. The geometry of α-sheet: Implications for its possible function as amyloid precursor in proteins

    Proteins: Structure, Function, and Bioinformatics

    Volume 71, Issue 1, April 2008, Pages: 415–425, Steven Hayward and E. James Milner-White

    Article first published online : 23 OCT 2007, DOI: 10.1002/prot.21717