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There are 33277 results for: content related to: Prediction of RNA-binding residues in proteins from primary sequence using an enriched random forest model with a novel hybrid feature

  1. RBRIdent: An algorithm for improved identification of RNA-binding residues in proteins from primary sequences

    Proteins: Structure, Function, and Bioinformatics

    Volume 83, Issue 6, June 2015, Pages: 1068–1077, Dapeng Xiong, Jianyang Zeng and Haipeng Gong

    Version of Record online : 22 APR 2015, DOI: 10.1002/prot.24806

  2. RBRDetector: Improved prediction of binding residues on RNA-binding protein structures using complementary feature- and template-based strategies

    Proteins: Structure, Function, and Bioinformatics

    Volume 82, Issue 10, October 2014, Pages: 2455–2471, Xiao-Xia Yang, Zhi-Luo Deng and Rong Liu

    Version of Record online : 9 JUN 2014, DOI: 10.1002/prot.24610

  3. Prediction of RNA Binding Sites in Proteins

    Algorithmic and Artificial Intelligence Methods for Protein Bioinformatics

    Zhi-Ping Liu, Luonan Chen, Pages: 153–170, 2013

    Published Online : 25 OCT 2013, DOI: 10.1002/9781118567869.ch8

  4. SVM based prediction of RNA-binding proteins using binding residues and evolutionary information

    Journal of Molecular Recognition

    Volume 24, Issue 2, March/April 2011, Pages: 303–313, Manish Kumar, M. Michael Gromiha and Gajendra P. S. Raghava

    Version of Record online : 30 JUL 2010, DOI: 10.1002/jmr.1061

  5. TargetATPsite: A template-free method for ATP-binding sites prediction with residue evolution image sparse representation and classifier ensemble

    Journal of Computational Chemistry

    Volume 34, Issue 11, 30 April 2013, Pages: 974–985, Dong-Jun Yu, Jun Hu, Yan Huang, Hong-Bin Shen, Yong Qi, Zhen-Min Tang and Jing-Yu Yang

    Version of Record online : 3 JAN 2013, DOI: 10.1002/jcc.23219

  6. DNABind: A hybrid algorithm for structure-based prediction of DNA-binding residues by combining machine learning- and template-based approaches

    Proteins: Structure, Function, and Bioinformatics

    Volume 81, Issue 11, November 2013, Pages: 1885–1899, Rong Liu and Jianjun Hu

    Version of Record online : 16 AUG 2013, DOI: 10.1002/prot.24330

  7. Prediction of Molecular Interactions from 3D-Structures: From Small Ligands to Large Protein Complexes

    Prediction of Protein Structures, Functions, and Interactions

    Kengo Kinoshita, Hidetoshi Kono, Kei Yura, Pages: 159–186, 2008

    Published Online : 18 DEC 2008, DOI: 10.1002/9780470741894.ch7

  8. Prediction of RNA binding sites in a protein using SVM and PSSM profile

    Proteins: Structure, Function, and Bioinformatics

    Volume 71, Issue 1, April 2008, Pages: 189–194, Manish Kumar, M. Michael Gromiha and G. P. S. Raghava

    Version of Record online : 11 OCT 2007, DOI: 10.1002/prot.21677

  9. You have free access to this content
    In various protein complexes, disordered protomers have large per-residue surface areas and area of protein-, DNA- and RNA-binding interfaces

    FEBS Letters

    Volume 589, Issue 19PartA, September 14, 2015, Pages: 2561–2569, Zhonghua Wu, Gang Hu, Jianyi Yang, Zhenling Peng, Vladimir N. Uversky and Lukasz Kurgan

    Version of Record online : 20 AUG 2015, DOI: 10.1016/j.febslet.2015.08.014

  10. Ligand-Binding Residue Prediction

    Introduction to Protein Structure Prediction: Methods and Algorithms

    Chris Kauffman, George Karypis, Pages: 343–368, 2010

    Published Online : 7 SEP 2010, DOI: 10.1002/9780470882207.ch16

  11. An accurate feature-based method for identifying DNA-binding residues on protein surfaces

    Proteins: Structure, Function, and Bioinformatics

    Volume 79, Issue 2, February 2011, Pages: 509–517, Yi Xiong, Juan Liu and Dong-Qing Wei

    Version of Record online : 10 NOV 2010, DOI: 10.1002/prot.22898

  12. You have free access to this content
    Homology modeling of human Toll-like receptors TLR7, 8, and 9 ligand-binding domains

    Protein Science

    Volume 18, Issue 8, August 2009, Pages: 1684–1691, Tiandi Wei, Jing Gong, Ferdinand Jamitzky, Wolfgang M. Heckl, Robert W. Stark and Shaila C. Rössle

    Version of Record online : 11 JUN 2009, DOI: 10.1002/pro.186

  13. You have free access to this content
    Predictions of protein–RNA interactions

    Wiley Interdisciplinary Reviews: Computational Molecular Science

    Volume 3, Issue 2, March/April 2013, Pages: 161–175, Davide Cirillo, Federico Agostini and Gian Gaetano Tartaglia

    Version of Record online : 25 SEP 2012, DOI: 10.1002/wcms.1119

  14. Computational tools for protein–DNA interactions

    Wiley Interdisciplinary Reviews: Data Mining and Knowledge Discovery

    Volume 2, Issue 1, January/February 2012, Pages: 14–28, Christopher Kauffman and George Karypis

    Version of Record online : 2 NOV 2011, DOI: 10.1002/widm.48

  15. You have full text access to this OnlineOpen article
    Analysis of Lsm1p and Lsm8p domains in the cellular localization of Lsm complexes in budding yeast

    The FEBS Journal

    Volume 276, Issue 13, July 2009, Pages: 3602–3617, Martin A. M. Reijns, Tatsiana Auchynnikava and Jean D. Beggs

    Version of Record online : 20 MAY 2009, DOI: 10.1111/j.1742-4658.2009.07080.x

  16. You have free access to this content
    Residue-level prediction of DNA-binding sites and its application on DNA-binding protein predictions

    FEBS Letters

    Volume 581, Issue 5, March 06, 2007, Pages: 1058–1066, Nitin Bhardwaj and Hui Lu

    Version of Record online : 7 FEB 2007, DOI: 10.1016/j.febslet.2007.01.086

  17. Disordered nucleiome: Abundance of intrinsic disorder in the DNA- and RNA-binding proteins in 1121 species from Eukaryota, Bacteria and Archaea

    PROTEOMICS

    Volume 16, Issue 10, May 2016, Pages: 1486–1498, Chen Wang, Vladimir N. Uversky and Lukasz Kurgan

    Version of Record online : 27 APR 2016, DOI: 10.1002/pmic.201500177

  18. Two key arginine residues in the coat protein of Bamboo mosaic virus differentially affect the accumulation of viral genomic and subgenomic RNAs

    Molecular Plant Pathology

    Volume 15, Issue 2, February 2014, Pages: 196–210, Chien-Jen Hung, Chung-Chi Hu, Na-Sheng Lin, Ya-Chien Lee, Menghsiao Meng, Ching-Hsiu Tsai and Yau-Heiu Hsu

    Version of Record online : 28 OCT 2013, DOI: 10.1111/mpp.12080

  19. A new size-independent score for pairwise protein structure alignment and its application to structure classification and nucleic-acid binding prediction

    Proteins: Structure, Function, and Bioinformatics

    Volume 80, Issue 8, August 2012, Pages: 2080–2088, Yuedong Yang, Jian Zhan, Huiying Zhao and Yaoqi Zhou

    Version of Record online : 25 MAY 2012, DOI: 10.1002/prot.24100

  20. Sequence-based prediction of protein–peptide binding sites using support vector machine

    Journal of Computational Chemistry

    Volume 37, Issue 13, May 15, 2016, Pages: 1223–1229, Ghazaleh Taherzadeh, Yuedong Yang, Tuo Zhang, Alan Wee-Chung Liew and Yaoqi Zhou

    Version of Record online : 2 FEB 2016, DOI: 10.1002/jcc.24314