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There are 20532 results for: content related to: Automated tertiary structure prediction with accurate local model quality assessment using the intfold-ts method

  1. Evaluation of model quality predictions in CASP9

    Proteins: Structure, Function, and Bioinformatics

    Volume 79, Issue S10, 2011, Pages: 91–106, Andriy Kryshtafovych, Krzysztof Fidelis and Anna Tramontano

    Version of Record online : 14 OCT 2011, DOI: 10.1002/prot.23180

  2. Assessment of template based protein structure predictions in CASP9

    Proteins: Structure, Function, and Bioinformatics

    Volume 79, Issue S10, 2011, Pages: 37–58, Valerio Mariani, Florian Kiefer, Tobias Schmidt, Juergen Haas and Torsten Schwede

    Version of Record online : 15 OCT 2011, DOI: 10.1002/prot.23177

  3. 3Drefine: Consistent protein structure refinement by optimizing hydrogen bonding network and atomic-level energy minimization

    Proteins: Structure, Function, and Bioinformatics

    Volume 81, Issue 1, January 2013, Pages: 119–131, Debswapna Bhattacharya and Jianlin Cheng

    Version of Record online : 26 SEP 2012, DOI: 10.1002/prot.24167

  4. MUFOLD-WQA: A new selective consensus method for quality assessment in protein structure prediction

    Proteins: Structure, Function, and Bioinformatics

    Volume 79, Issue S10, 2011, Pages: 185–195, Qingguo Wang, Kittinun Vantasin, Dong Xu and Yi Shang

    Version of Record online : 14 OCT 2011, DOI: 10.1002/prot.23185

  5. You have free access to this content
    An iterative self-refining and self-evaluating approach for protein model quality estimation

    Protein Science

    Volume 21, Issue 1, January 2012, Pages: 142–151, Zheng Wang and Jianlin Cheng

    Version of Record online : 23 NOV 2011, DOI: 10.1002/pro.764

  6. A multilayer evaluation approach for protein structure prediction and model quality assessment

    Proteins: Structure, Function, and Bioinformatics

    Volume 79, Issue S10, 2011, Pages: 172–184, Jingfen Zhang, Qingguo Wang, Kittinun Vantasin, Jiong Zhang, Zhiquan He, Ioan Kosztin, Yi Shang and Dong Xu

    Version of Record online : 14 OCT 2011, DOI: 10.1002/prot.23184

  7. Template-based protein structure modeling using TASSERVMT

    Proteins: Structure, Function, and Bioinformatics

    Volume 80, Issue 2, February 2012, Pages: 352–361, Hongyi Zhou and Jeffrey Skolnick

    Version of Record online : 22 NOV 2011, DOI: 10.1002/prot.23183

  8. CASP9 results compared to those of previous casp experiments

    Proteins: Structure, Function, and Bioinformatics

    Volume 79, Issue S10, 2011, Pages: 196–207, Andriy Kryshtafovych, Krzysztof Fidelis and John Moult

    Version of Record online : 14 OCT 2011, DOI: 10.1002/prot.23182

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    Assessment of the assessment: Evaluation of the model quality estimates in CASP10

    Proteins: Structure, Function, and Bioinformatics

    Volume 82, Issue S2, February 2014, Pages: 112–126, Andriy Kryshtafovych, Alessandro Barbato, Krzysztof Fidelis, Bohdan Monastyrskyy, Torsten Schwede and Anna Tramontano

    Version of Record online : 31 AUG 2013, DOI: 10.1002/prot.24347

  10. CASP9 assessment of free modeling target predictions

    Proteins: Structure, Function, and Bioinformatics

    Volume 79, Issue S10, 2011, Pages: 59–73, Lisa Kinch, Shuo Yong Shi, Qian Cong, Hua Cheng, Yuxing Liao and Nick V. Grishin

    Version of Record online : 14 OCT 2011, DOI: 10.1002/prot.23181

  11. Selective refinement and selection of near-native models in protein structure prediction

    Proteins: Structure, Function, and Bioinformatics

    Volume 83, Issue 10, October 2015, Pages: 1823–1835, Jiong Zhang, Bogdan Barz, Jingfen Zhang, Dong Xu and Ioan Kosztin

    Version of Record online : 12 AUG 2015, DOI: 10.1002/prot.24866

  12. A multiple-template approach to protein threading

    Proteins: Structure, Function, and Bioinformatics

    Volume 79, Issue 6, June 2011, Pages: 1930–1939, Jian Peng and Jinbo Xu

    Version of Record online : 4 APR 2011, DOI: 10.1002/prot.23016

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    Evaluation of predictions in the CASP10 model refinement category

    Proteins: Structure, Function, and Bioinformatics

    Volume 82, Issue S2, February 2014, Pages: 98–111, Timothy Nugent, Domenico Cozzetto and David T. Jones

    Version of Record online : 3 JAN 2014, DOI: 10.1002/prot.24377

  14. Refinement of unreliable local regions in template-based protein models

    Proteins: Structure, Function, and Bioinformatics

    Volume 80, Issue 8, August 2012, Pages: 1974–1986, Hahnbeom Park and Chaok Seok

    Version of Record online : 23 MAY 2012, DOI: 10.1002/prot.24086

  15. Critical assessment of methods of protein structure prediction (CASP)—round IX

    Proteins: Structure, Function, and Bioinformatics

    Volume 79, Issue S10, 2011, Pages: 1–5, John Moult, Krzysztof Fidelis, Andriy Kryshtafovych and Anna Tramontano

    Version of Record online : 14 OCT 2011, DOI: 10.1002/prot.23200

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    Over-expression of APAF-1 and caspase-9 augments radiation-induced apoptosis in U-373MG glioma cells

    International Journal of Cancer

    Volume 93, Issue 2, 15 July 2001, Pages: 252–261, Nobusada Shinoura, Shinya Sakurai, Akio Asai, Takaaki Kirino and Hirofumi Hamada

    Version of Record online : 26 APR 2001, DOI: 10.1002/ijc.1327

  17. Association of caspase-9 and RUNX3 with inflammatory bowel disease

    Tissue Antigens

    Volume 77, Issue 1, January 2011, Pages: 23–29, C. Guo, T. Ahmad, J. Beckly, J. R. F. Cummings, L. Hancock, A. Geremia, R. Cooney, S. Pathan and D. P. Jewell

    Version of Record online : 30 SEP 2010, DOI: 10.1111/j.1399-0039.2010.01569.x

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    Influence of caspases 8 and 9 gene promoter polymorphism on prostate cancer susceptibility and early development of hormone refractory prostate cancer

    BJU International

    Volume 107, Issue 3, February 2011, Pages: 471–476, Pravin Kesarwani, Raju K. Mandal, Ruchir Maheshwari and Rama Devi Mittal

    Version of Record online : 27 AUG 2010, DOI: 10.1111/j.1464-410X.2010.09533.x

  19. CASP9 target classification

    Proteins: Structure, Function, and Bioinformatics

    Volume 79, Issue S10, 2011, Pages: 21–36, Lisa N. Kinch, Shuoyong Shi, Hua Cheng, Qian Cong, Jimin Pei, Valerio Mariani, Torsten Schwede and Nick V. Grishin

    Version of Record online : 14 OCT 2011, DOI: 10.1002/prot.23190

  20. Evaluation of disorder predictions in CASP9

    Proteins: Structure, Function, and Bioinformatics

    Volume 79, Issue S10, 2011, Pages: 107–118, Bohdan Monastyrskyy, Krzysztof Fidelis, John Moult, Anna Tramontano and Andriy Kryshtafovych

    Version of Record online : 16 SEP 2011, DOI: 10.1002/prot.23161