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There are 12695 results for: content related to: Assessment of protein structure refinement in CASP9

  1. SIDEpro: A novel machine learning approach for the fast and accurate prediction of side-chain conformations

    Proteins: Structure, Function, and Bioinformatics

    Volume 80, Issue 1, January 2012, Pages: 142–153, Ken Nagata, Arlo Randall and Pierre Baldi

    Article first published online : 9 NOV 2011, DOI: 10.1002/prot.23170

  2. Assessment of template based protein structure predictions in CASP9

    Proteins: Structure, Function, and Bioinformatics

    Volume 79, Issue S10, 2011, Pages: 37–58, Valerio Mariani, Florian Kiefer, Tobias Schmidt, Juergen Haas and Torsten Schwede

    Article first published online : 15 OCT 2011, DOI: 10.1002/prot.23177

  3. A multilayer evaluation approach for protein structure prediction and model quality assessment

    Proteins: Structure, Function, and Bioinformatics

    Volume 79, Issue S10, 2011, Pages: 172–184, Jingfen Zhang, Qingguo Wang, Kittinun Vantasin, Jiong Zhang, Zhiquan He, Ioan Kosztin, Yi Shang and Dong Xu

    Article first published online : 14 OCT 2011, DOI: 10.1002/prot.23184

  4. Ab initio protein structure assembly using continuous structure fragments and optimized knowledge-based force field

    Proteins: Structure, Function, and Bioinformatics

    Volume 80, Issue 7, July 2012, Pages: 1715–1735, Dong Xu and Yang Zhang

    Article first published online : 13 APR 2012, DOI: 10.1002/prot.24065

  5. Evaluation of disorder predictions in CASP9

    Proteins: Structure, Function, and Bioinformatics

    Volume 79, Issue S10, 2011, Pages: 107–118, Bohdan Monastyrskyy, Krzysztof Fidelis, John Moult, Anna Tramontano and Andriy Kryshtafovych

    Article first published online : 16 SEP 2011, DOI: 10.1002/prot.23161

  6. CASP9 results compared to those of previous casp experiments

    Proteins: Structure, Function, and Bioinformatics

    Volume 79, Issue S10, 2011, Pages: 196–207, Andriy Kryshtafovych, Krzysztof Fidelis and John Moult

    Article first published online : 14 OCT 2011, DOI: 10.1002/prot.23182

  7. Evaluation of model quality predictions in CASP9

    Proteins: Structure, Function, and Bioinformatics

    Volume 79, Issue S10, 2011, Pages: 91–106, Andriy Kryshtafovych, Krzysztof Fidelis and Anna Tramontano

    Article first published online : 14 OCT 2011, DOI: 10.1002/prot.23180

  8. Modeling protein density of states: Additive hydrophobic effects are insufficient for calorimetric two-state cooperativity

    Proteins: Structure, Function, and Bioinformatics

    Volume 40, Issue 4, 1 September 2000, Pages: 543–571, Hue Sun Chan

    Article first published online : 28 JUN 2000, DOI: 10.1002/1097-0134(20000901)40:4<543::AID-PROT20>3.0.CO;2-O

  9. Detection of multiscale pockets on protein surfaces using mathematical morphology

    Proteins: Structure, Function, and Bioinformatics

    Volume 78, Issue 5, April 2010, Pages: 1195–1211, Takeshi Kawabata

    Article first published online : 16 OCT 2009, DOI: 10.1002/prot.22639

  10. 3Drefine: Consistent protein structure refinement by optimizing hydrogen bonding network and atomic-level energy minimization

    Proteins: Structure, Function, and Bioinformatics

    Volume 81, Issue 1, January 2013, Pages: 119–131, Debswapna Bhattacharya and Jianlin Cheng

    Article first published online : 26 SEP 2012, DOI: 10.1002/prot.24167

  11. MUFOLD-WQA: A new selective consensus method for quality assessment in protein structure prediction

    Proteins: Structure, Function, and Bioinformatics

    Volume 79, Issue S10, 2011, Pages: 185–195, Qingguo Wang, Kittinun Vantasin, Dong Xu and Yi Shang

    Article first published online : 14 OCT 2011, DOI: 10.1002/prot.23185

  12. Statistical mechanics-based method to extract atomic distance-dependent potentials from protein structures

    Proteins: Structure, Function, and Bioinformatics

    Volume 79, Issue 9, September 2011, Pages: 2648–2661, Sheng-You Huang and Xiaoqin Zou

    Article first published online : 5 JUL 2011, DOI: 10.1002/prot.23086

  13. Protein loop closure using orientational restraints from NMR data

    Proteins: Structure, Function, and Bioinformatics

    Volume 80, Issue 2, February 2012, Pages: 433–453, Chittaranjan Tripathy, Jianyang Zeng, Pei Zhou and Bruce Randall Donald

    Article first published online : 13 DEC 2011, DOI: 10.1002/prot.23207

  14. pH replica-exchange method based on discrete protonation states

    Proteins: Structure, Function, and Bioinformatics

    Volume 79, Issue 12, December 2011, Pages: 3420–3436, Satoru G. Itoh, Ana Damjanović and Bernard R. Brooks

    Article first published online : 15 OCT 2011, DOI: 10.1002/prot.23176

  15. Quaternion-based definition of protein secondary structure straightness and its relationship to Ramachandran angles

    Proteins: Structure, Function, and Bioinformatics

    Volume 79, Issue 7, July 2011, Pages: 2172–2180, Robert M. Hanson, Daniel Kohler and Steven G. Braun

    Article first published online : 9 MAY 2011, DOI: 10.1002/prot.23037

  16. Calculation of rate spectra from noisy time series data

    Proteins: Structure, Function, and Bioinformatics

    Volume 80, Issue 2, February 2012, Pages: 342–351, Vincent A. Voelz and Vijay S. Pande

    Article first published online : 17 NOV 2011, DOI: 10.1002/prot.23171

  17. Novel approach for α-helical topology prediction in globular proteins: Generation of interhelical restraints

    Proteins: Structure, Function, and Bioinformatics

    Volume 65, Issue 4, 1 December 2006, Pages: 930–952, S. R. McAllister, B. E. Mickus, J. L. Klepeis and C. A. Floudas

    Article first published online : 6 OCT 2006, DOI: 10.1002/prot.21095

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    Multiscale simulations of protein landscapes: Using coarse-grained models as reference potentials to full explicit models

    Proteins: Structure, Function, and Bioinformatics

    Volume 78, Issue 5, April 2010, Pages: 1212–1227, Benjamin M. Messer, Maite Roca, Zhen T. Chu, Spyridon Vicatos, Alexandra Vardi Kilshtain and Arieh Warshel

    Article first published online : 16 OCT 2009, DOI: 10.1002/prot.22640

  19. Validating the vitality strategy for fighting drug resistance

    Proteins: Structure, Function, and Bioinformatics

    Volume 80, Issue 4, April 2012, Pages: 1110–1122, Nidhi Singh, Maria P. Frushicheva and Arieh Warshel

    Article first published online : 31 JAN 2012, DOI: 10.1002/prot.24012

  20. The geometry of α-sheet: Implications for its possible function as amyloid precursor in proteins

    Proteins: Structure, Function, and Bioinformatics

    Volume 71, Issue 1, April 2008, Pages: 415–425, Steven Hayward and E. James Milner-White

    Article first published online : 23 OCT 2007, DOI: 10.1002/prot.21717