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There are 2214257 results for: content related to: Evaluation of residue–residue contact predictions in CASP9

  1. Improving accuracy of protein contact prediction using balanced network deconvolution

    Proteins: Structure, Function, and Bioinformatics

    Volume 83, Issue 3, March 2015, Pages: 485–496, Hai-Ping Sun, Yan Huang, Xiao-Fan Wang, Yang Zhang and Hong-Bin Shen

    Version of Record online : 24 JAN 2015, DOI: 10.1002/prot.24744

  2. Evaluation of disorder predictions in CASP9

    Proteins: Structure, Function, and Bioinformatics

    Volume 79, Issue S10, 2011, Pages: 107–118, Bohdan Monastyrskyy, Krzysztof Fidelis, John Moult, Anna Tramontano and Andriy Kryshtafovych

    Version of Record online : 16 SEP 2011, DOI: 10.1002/prot.23161

  3. CASP9 assessment of free modeling target predictions

    Proteins: Structure, Function, and Bioinformatics

    Volume 79, Issue S10, 2011, Pages: 59–73, Lisa Kinch, Shuo Yong Shi, Qian Cong, Hua Cheng, Yuxing Liao and Nick V. Grishin

    Version of Record online : 14 OCT 2011, DOI: 10.1002/prot.23181

  4. Critical assessment of methods of protein structure prediction (CASP)—round IX

    Proteins: Structure, Function, and Bioinformatics

    Volume 79, Issue S10, 2011, Pages: 1–5, John Moult, Krzysztof Fidelis, Andriy Kryshtafovych and Anna Tramontano

    Version of Record online : 14 OCT 2011, DOI: 10.1002/prot.23200

  5. Assessment of ligand-binding residue predictions in CASP9

    Proteins: Structure, Function, and Bioinformatics

    Volume 79, Issue S10, 2011, Pages: 126–136, Tobias Schmidt, Jürgen Haas, Tiziano Gallo Cassarino and Torsten Schwede

    Version of Record online : 11 OCT 2011, DOI: 10.1002/prot.23174

  6. You have free access to this content
    New encouraging developments in contact prediction: Assessment of the CASP11 results

    Proteins: Structure, Function, and Bioinformatics

    Volume 84, Issue S1, September 2016, Pages: 131–144, Bohdan Monastyrskyy, Daniel D'Andrea, Krzysztof Fidelis, Anna Tramontano and Andriy Kryshtafovych

    Version of Record online : 17 NOV 2015, DOI: 10.1002/prot.24943

  7. Evaluation of model quality predictions in CASP9

    Proteins: Structure, Function, and Bioinformatics

    Volume 79, Issue S10, 2011, Pages: 91–106, Andriy Kryshtafovych, Krzysztof Fidelis and Anna Tramontano

    Version of Record online : 14 OCT 2011, DOI: 10.1002/prot.23180

  8. Automated protein structure modeling in CASP9 by I-TASSER pipeline combined with QUARK-based ab initio folding and FG-MD-based structure refinement

    Proteins: Structure, Function, and Bioinformatics

    Volume 79, Issue S10, 2011, Pages: 147–160, Dong Xu, Jian Zhang, Ambrish Roy and Yang Zhang

    Version of Record online : 23 AUG 2011, DOI: 10.1002/prot.23111

  9. CAD-score: A new contact area difference-based function for evaluation of protein structural models

    Proteins: Structure, Function, and Bioinformatics

    Volume 81, Issue 1, January 2013, Pages: 149–162, Kliment Olechnovič, Eleonora Kulberkytė and Česlovas Venclovas

    Version of Record online : 29 SEP 2012, DOI: 10.1002/prot.24172

  10. Assessment of template based protein structure predictions in CASP9

    Proteins: Structure, Function, and Bioinformatics

    Volume 79, Issue S10, 2011, Pages: 37–58, Valerio Mariani, Florian Kiefer, Tobias Schmidt, Juergen Haas and Torsten Schwede

    Version of Record online : 15 OCT 2011, DOI: 10.1002/prot.23177

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    Evaluation of residue–residue contact prediction in CASP10

    Proteins: Structure, Function, and Bioinformatics

    Volume 82, Issue S2, February 2014, Pages: 138–153, Bohdan Monastyrskyy, Daniel D'Andrea, Krzysztof Fidelis, Anna Tramontano and Andriy Kryshtafovych

    Version of Record online : 31 AUG 2013, DOI: 10.1002/prot.24340

  12. ASTRO-FOLD 2.0: An enhanced framework for protein structure prediction

    AIChE Journal

    Volume 58, Issue 5, May 2012, Pages: 1619–1637, A. Subramani, Y. Wei and C. A. Floudas

    Version of Record online : 31 MAY 2011, DOI: 10.1002/aic.12669

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    Modeling large regions in proteins: Applications to loops, termini, and folding

    Protein Science

    Volume 21, Issue 1, January 2012, Pages: 107–121, Aashish N. Adhikari, Jian Peng, Michael Wilde, Jinbo Xu, Karl F. Freed and Tobin R. Sosnick

    Version of Record online : 5 DEC 2011, DOI: 10.1002/pro.767

  14. Toward optimal fragment generations for ab initio protein structure assembly

    Proteins: Structure, Function, and Bioinformatics

    Volume 81, Issue 2, February 2013, Pages: 229–239, Dong Xu and Yang Zhang

    Version of Record online : 16 OCT 2012, DOI: 10.1002/prot.24179

  15. CASP9 results compared to those of previous casp experiments

    Proteins: Structure, Function, and Bioinformatics

    Volume 79, Issue S10, 2011, Pages: 196–207, Andriy Kryshtafovych, Krzysztof Fidelis and John Moult

    Version of Record online : 14 OCT 2011, DOI: 10.1002/prot.23182

  16. 3Drefine: Consistent protein structure refinement by optimizing hydrogen bonding network and atomic-level energy minimization

    Proteins: Structure, Function, and Bioinformatics

    Volume 81, Issue 1, January 2013, Pages: 119–131, Debswapna Bhattacharya and Jianlin Cheng

    Version of Record online : 26 SEP 2012, DOI: 10.1002/prot.24167

  17. MUFOLD-WQA: A new selective consensus method for quality assessment in protein structure prediction

    Proteins: Structure, Function, and Bioinformatics

    Volume 79, Issue S10, 2011, Pages: 185–195, Qingguo Wang, Kittinun Vantasin, Dong Xu and Yi Shang

    Version of Record online : 14 OCT 2011, DOI: 10.1002/prot.23185

  18. Target highlights in CASP9: Experimental target structures for the critical assessment of techniques for protein structure prediction

    Proteins: Structure, Function, and Bioinformatics

    Volume 79, Issue S10, 2011, Pages: 6–20, Andriy Kryshtafovych, John Moult, Sergio G. Bartual, J. Fernando Bazan, Helen Berman, Darren E. Casteel, Evangelos Christodoulou, John K. Everett, Jens Hausmann, Tatjana Heidebrecht, Tanya Hills, Raymond Hui, John F. Hunt, Jayaraman Seetharaman, Andrzej Joachimiak, Michael A. Kennedy, Choel Kim, Andreas Lingel, Karolina Michalska, Gaetano T. Montelione, José M. Otero, Anastassis Perrakis, Juan C. Pizarro, Mark J. van Raaij, Theresa A. Ramelot, Francois Rousseau, Liang Tong, Amy K. Wernimont, Jasmine Young and Torsten Schwede

    Version of Record online : 21 OCT 2011, DOI: 10.1002/prot.23196

  19. Selective refinement and selection of near-native models in protein structure prediction

    Proteins: Structure, Function, and Bioinformatics

    Volume 83, Issue 10, October 2015, Pages: 1823–1835, Jiong Zhang, Bogdan Barz, Jingfen Zhang, Dong Xu and Ioan Kosztin

    Version of Record online : 12 AUG 2015, DOI: 10.1002/prot.24866

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    An iterative self-refining and self-evaluating approach for protein model quality estimation

    Protein Science

    Volume 21, Issue 1, January 2012, Pages: 142–151, Zheng Wang and Jianlin Cheng

    Version of Record online : 23 NOV 2011, DOI: 10.1002/pro.764