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There are 12023 results for: content related to: The linear interaction energy method for the prediction of protein stability changes upon mutation

  1. You have free access to this content
    ΔG-based prediction and experimental confirmation of SYCRP1-binding sites on the Synechocystis genome

    The FEBS Journal

    Volume 275, Issue 19, October 2008, Pages: 4786–4795, Katsumi Omagari, Hidehisa Yoshimura, Takayuki Suzuki, Mitunori Takano, Masayuki Ohmori and Akinori Sarai

    Version of Record online : 29 AUG 2008, DOI: 10.1111/j.1742-4658.2008.06618.x

  2. Importance of individual side chains for the stability of a protein fold: Computational alanine scanning of the insulin monomer

    Journal of Computational Chemistry

    Volume 27, Issue 15, 30 November 2006, Pages: 1843–1857, Vincent Zoete and Markus Meuwly

    Version of Record online : 18 SEP 2006, DOI: 10.1002/jcc.20512

  3. Computational alanine scanning of the 1:1 human growth hormone–receptor complex

    Journal of Computational Chemistry

    Volume 23, Issue 1, 15 January 2002, Pages: 15–27, Shuanghong Huo, Irina Massova and Peter A. Kollman

    Version of Record online : 14 NOV 2001, DOI: 10.1002/jcc.1153

  4. Anatomy of specific interactions between λ repressor and operator DNA

    Proteins: Structure, Function, and Bioinformatics

    Volume 53, Issue 1, October 2003, Pages: 33–43, Motohisa Oobatake, Hidetoshi Kono, Yifei Wang and Akinori Sarai

    Version of Record online : 5 AUG 2003, DOI: 10.1002/prot.10438

  5. Cooperative propagation of local stability changes from low-stability and high-stability regions in a SH3 domain

    Proteins: Structure, Function, and Bioinformatics

    Volume 67, Issue 3, 15 May 2007, Pages: 531–547, Salvador Casares, Obdulio López-Mayorga, M. Cristina Vega, Ana Cámara-Artigas and Francisco Conejero-Lara

    Version of Record online : 28 FEB 2007, DOI: 10.1002/prot.21284

  6. Free energy simulations and MM–PBSA analyses on the affinity and specificity of steroid binding to antiestradiol antibody

    Proteins: Structure, Function, and Bioinformatics

    Volume 55, Issue 1, April 2004, Pages: 34–43, Tuomo Laitinen, Jussi A. Kankare and Mikael Peräkylä

    Version of Record online : 6 FEB 2004, DOI: 10.1002/prot.10399

  7. Thermodynamic basis of selectivity in guide-target-mismatched rna interference

    Proteins: Structure, Function, and Bioinformatics

    Volume 80, Issue 5, May 2012, Pages: 1283–1298, Thomas T. Joseph and Roman Osman

    Version of Record online : 10 FEB 2012, DOI: 10.1002/prot.24025

  8. Electrostatic contribution to the binding stability of protein–protein complexes

    Proteins: Structure, Function, and Bioinformatics

    Volume 65, Issue 1, 1 October 2006, Pages: 87–102, Feng Dong and Huan-Xiang Zhou

    Version of Record online : 19 JUL 2006, DOI: 10.1002/prot.21070

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    Extent of enthalpy–entropy compensation in protein–ligand interactions

    Protein Science

    Volume 20, Issue 9, September 2011, Pages: 1607–1618, Tjelvar S. G. Olsson, John E. Ladbury, Will R. Pitt and Mark A. Williams

    Version of Record online : 2 AUG 2011, DOI: 10.1002/pro.692

  10. Systematic evaluation of single mismatch stability predictors for fluorescence in situ hybridization

    Environmental Microbiology

    Volume 10, Issue 10, October 2008, Pages: 2872–2885, L. Safak Yilmaz, Lindsey I. Bergsven and Daniel R. Noguera

    Version of Record online : 14 AUG 2008, DOI: 10.1111/j.1462-2920.2008.01719.x

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    Sequence of events in folding mechanism: Beyond the Gō model

    Protein Science

    Volume 15, Issue 7, July 2006, Pages: 1638–1652, Ludovico Sutto, Guido Tiana and Ricardo A. Broglia

    Version of Record online : 1 JAN 2009, DOI: 10.1110/ps.052056006

  12. Free energy calculations for theophylline binding to an RNA aptamer: Comparison of MM-PBSA and thermodynamic integration methods

    Biopolymers

    Volume 68, Issue 1, January 2003, Pages: 16–34, Hiroaki Gouda, Irwin D. Kuntz, David A. Case and Peter A. Kollman

    Version of Record online : 25 NOV 2002, DOI: 10.1002/bip.10270

  13. Inclusion of ionization states of ligands in affinity calculations

    Proteins: Structure, Function, and Bioinformatics

    Volume 76, Issue 1, July 2009, Pages: 138–150, Serena Donnini, Alessandra Villa, Gerrit Groenhof, Alan E. Mark, Rik K. Wierenga and André H. Juffer

    Version of Record online : 18 NOV 2008, DOI: 10.1002/prot.22326

  14. A residue in helical conformation in the native state adopts a β-strand conformation in the folding transition state despite its high and canonical ϕ-value

    Proteins: Structure, Function, and Bioinformatics

    Volume 80, Issue 5, May 2012, Pages: 1343–1349, Arash Zarrine-Afsar, Samira Dahesh and Alan R. Davidson

    Version of Record online : 13 FEB 2012, DOI: 10.1002/prot.24030

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    Determination of network of residues that regulate allostery in protein families using sequence analysis

    Protein Science

    Volume 15, Issue 2, February 2006, Pages: 258–268, Ruxandra I. Dima and D. Thirumalai

    Version of Record online : 1 JAN 2009, DOI: 10.1110/ps.051767306

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    Exploring the impact of polyproline II (PII) conformational bias on the binding of peptides to the SEM-5 SH3 domain

    Protein Science

    Volume 17, Issue 7, July 2008, Pages: 1200–1211, Steven T. Whitten, Huan-Wang Yang, Robert O. Fox and Vincent J. Hilser

    Version of Record online : 2 JAN 2009, DOI: 10.1110/ps.033647.107

  17. A multiscale approach to predicting affinity changes in protein–protein interfaces

    Proteins: Structure, Function, and Bioinformatics

    Volume 82, Issue 10, October 2014, Pages: 2681–2690, Daniel F. A. R. Dourado and Samuel Coulbourn Flores

    Version of Record online : 5 JUL 2014, DOI: 10.1002/prot.24634

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    A general method for the quantitative analysis of functional chimeras: Applications from site-directed mutagenesis and macromolecular association

    Protein Science

    Volume 10, Issue 3, March 2001, Pages: 581–591, Tinh N. Luong and Jack F. Kirsch

    Version of Record online : 13 APR 2009, DOI: 10.1110/ps.24101

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    Interatomic potentials and solvation parameters from protein engineering data for buried residues

    Protein Science

    Volume 11, Issue 8, August 2002, Pages: 1984–2000, Andrei L. Lomize, Mikhail Y. Reibarkh and Irina D. Pogozheva

    Version of Record online : 13 APR 2009, DOI: 10.1110/ps.0307002

  20. Fluctuations between stabilizing and destabilizing electrostatic contributions of ion pairs in conformers of the c-Myc-Max leucine zipper

    Proteins: Structure, Function, and Bioinformatics

    Volume 41, Issue 4, 1 December 2000, Pages: 485–497, Sandeep Kumar and Ruth Nussinov

    Version of Record online : 18 OCT 2000, DOI: 10.1002/1097-0134(20001201)41:4<485::AID-PROT60>3.0.CO;2-E