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There are 15351 results for: content related to: Evaluation of model quality predictions in CASP9

  1. Information theory provides a comprehensive framework for the evaluation of protein structure predictions

    Proteins: Structure, Function, and Bioinformatics

    Volume 74, Issue 3, 15 February 2009, Pages: 701–711, Rosemarie Swanson, Marina Vannucci and Jerry W. Tsai

    Article first published online : 14 AUG 2008, DOI: 10.1002/prot.22186

  2. You have free access to this content
    Global and local model quality estimation at CASP8 using the scoring functions QMEAN and QMEANclust

    Proteins: Structure, Function, and Bioinformatics

    Volume 77, Issue S9, 2009, Pages: 173–180, Pascal Benkert, Silvio C. E. Tosatto and Torsten Schwede

    Article first published online : 14 JUL 2009, DOI: 10.1002/prot.22532

  3. MUFOLD-WQA: A new selective consensus method for quality assessment in protein structure prediction

    Proteins: Structure, Function, and Bioinformatics

    Volume 79, Issue S10, 2011, Pages: 185–195, Qingguo Wang, Kittinun Vantasin, Dong Xu and Yi Shang

    Article first published online : 14 OCT 2011, DOI: 10.1002/prot.23185

  4. QMEAN: A comprehensive scoring function for model quality assessment

    Proteins: Structure, Function, and Bioinformatics

    Volume 71, Issue 1, April 2008, Pages: 261–277, Pascal Benkert, Silvio C. E. Tosatto and Dietmar Schomburg

    Article first published online : 11 OCT 2007, DOI: 10.1002/prot.21715

  5. Assessment of template based protein structure predictions in CASP9

    Proteins: Structure, Function, and Bioinformatics

    Volume 79, Issue S10, 2011, Pages: 37–58, Valerio Mariani, Florian Kiefer, Tobias Schmidt, Juergen Haas and Torsten Schwede

    Article first published online : 15 OCT 2011, DOI: 10.1002/prot.23177

  6. A multilayer evaluation approach for protein structure prediction and model quality assessment

    Proteins: Structure, Function, and Bioinformatics

    Volume 79, Issue S10, 2011, Pages: 172–184, Jingfen Zhang, Qingguo Wang, Kittinun Vantasin, Jiong Zhang, Zhiquan He, Ioan Kosztin, Yi Shang and Dong Xu

    Article first published online : 14 OCT 2011, DOI: 10.1002/prot.23184

  7. CASP9 results compared to those of previous casp experiments

    Proteins: Structure, Function, and Bioinformatics

    Volume 79, Issue S10, 2011, Pages: 196–207, Andriy Kryshtafovych, Krzysztof Fidelis and John Moult

    Article first published online : 14 OCT 2011, DOI: 10.1002/prot.23182

  8. Assessment of CASP6 predictions for new and nearly new fold targets

    Proteins: Structure, Function, and Bioinformatics

    Volume 61, Issue S7, 2005, Pages: 67–83, James J. Vincent, Chin-Hsien Tai, B.K. Sathyanarayana and Byungkook Lee

    Article first published online : 26 SEP 2005, DOI: 10.1002/prot.20722

  9. Consistent refinement of submitted models at CASP using a knowledge-based potential

    Proteins: Structure, Function, and Bioinformatics

    Volume 78, Issue 12, September 2010, Pages: 2668–2678, Gaurav Chopra, Nir Kalisman and Michael Levitt

    Article first published online : 1 JUN 2010, DOI: 10.1002/prot.22781

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    The other 90% of the protein: Assessment beyond the Cαs for CASP8 template-based and high-accuracy models

    Proteins: Structure, Function, and Bioinformatics

    Volume 77, Issue S9, 2009, Pages: 29–49, Daniel A. Keedy, Christopher J. Williams, Jeffrey J. Headd, W. Bryan Arendall III, Vincent B. Chen, Gary J. Kapral, Robert A. Gillespie, Jeremy N. Block, Adam Zemla, David C. Richardson and Jane S. Richardson

    Article first published online : 20 JUL 2009, DOI: 10.1002/prot.22551

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    Assessment of CASP8 structure predictions for template free targets

    Proteins: Structure, Function, and Bioinformatics

    Volume 77, Issue S9, 2009, Pages: 50–65, Moshe Ben-David, Orly Noivirt-Brik, Aviv Paz, Jaime Prilusky, Joel L. Sussman and Yaakov Levy

    Article first published online : 21 AUG 2009, DOI: 10.1002/prot.22591

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    Evaluation of CASP8 model quality predictions

    Proteins: Structure, Function, and Bioinformatics

    Volume 77, Issue S9, 2009, Pages: 157–166, Domenico Cozzetto, Andriy Kryshtafovych and Anna Tramontano

    Article first published online : 14 JUL 2009, DOI: 10.1002/prot.22534

  13. WeFold: A coopetition for protein structure prediction

    Proteins: Structure, Function, and Bioinformatics

    Volume 82, Issue 9, September 2014, Pages: 1850–1868, George A. Khoury, Adam Liwo, Firas Khatib, Hongyi Zhou, Gaurav Chopra, Jaume Bacardit, Leandro O. Bortot, Rodrigo A. Faccioli, Xin Deng, Yi He, Pawel Krupa, Jilong Li, Magdalena A. Mozolewska, Adam K. Sieradzan, James Smadbeck, Tomasz Wirecki, Seth Cooper, Jeff Flatten, Kefan Xu, David Baker, Jianlin Cheng, Alexandre C. B. Delbem, Christodoulos A. Floudas, Chen Keasar, Michael Levitt, Zoran Popović, Harold A. Scheraga, Jeffrey Skolnick, Silvia N. Crivelli and Foldit Players

    Article first published online : 8 JUL 2014, DOI: 10.1002/prot.24538

  14. Princeton_TIGRESS: Protein geometry refinement using simulations and support vector machines

    Proteins: Structure, Function, and Bioinformatics

    Volume 82, Issue 5, May 2014, Pages: 794–814, George A. Khoury, Phanourios Tamamis, Neesha Pinnaduwage, James Smadbeck, Chris A. Kieslich and Christodoulos A. Floudas

    Article first published online : 22 NOV 2013, DOI: 10.1002/prot.24459

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    CASP8 results in context of previous experiments

    Proteins: Structure, Function, and Bioinformatics

    Volume 77, Issue S9, 2009, Pages: 217–228, Andriy Kryshtafovych, Krzysztof Fidelis and John Moult

    Article first published online : 5 AUG 2009, DOI: 10.1002/prot.22562

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    Assessment of the assessment: Evaluation of the model quality estimates in CASP10

    Proteins: Structure, Function, and Bioinformatics

    Volume 82, Issue S2, February 2014, Pages: 112–126, Andriy Kryshtafovych, Alessandro Barbato, Krzysztof Fidelis, Bohdan Monastyrskyy, Torsten Schwede and Anna Tramontano

    Article first published online : 31 AUG 2013, DOI: 10.1002/prot.24347

  17. CAD-score: A new contact area difference-based function for evaluation of protein structural models

    Proteins: Structure, Function, and Bioinformatics

    Volume 81, Issue 1, January 2013, Pages: 149–162, Kliment Olechnovič, Eleonora Kulberkytė and Česlovas Venclovas

    Article first published online : 29 SEP 2012, DOI: 10.1002/prot.24172

  18. Absolute quality evaluation of protein model structures using statistical potentials with respect to the native and reference states

    Proteins: Structure, Function, and Bioinformatics

    Volume 79, Issue 5, May 2011, Pages: 1550–1563, Matsuyuki Shirota, Takashi Ishida and Kengo Kinoshita

    Article first published online : 1 MAR 2011, DOI: 10.1002/prot.22982

  19. Assessment of protein structure refinement in CASP9

    Proteins: Structure, Function, and Bioinformatics

    Volume 79, Issue S10, 2011, Pages: 74–90, Justin L. MacCallum, Alberto Pérez, Michael J. Schnieders, Lan Hua, Matthew P. Jacobson and Ken A. Dill

    Article first published online : 30 AUG 2011, DOI: 10.1002/prot.23131

  20. Predicted residue–residue contacts can help the scoring of 3D models

    Proteins: Structure, Function, and Bioinformatics

    Volume 78, Issue 8, June 2010, Pages: 1980–1991, Michael L. Tress and Alfonso Valencia

    Article first published online : 12 MAR 2010, DOI: 10.1002/prot.22714