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There are 11178 results for: content related to: Evaluation of model quality predictions in CASP9

  1. You have free access to this content
    Analysis of free modeling predictions by RBO aleph in CASP11

    Proteins: Structure, Function, and Bioinformatics

    Volume 84, Issue S1, September 2016, Pages: 87–104, Mahmoud Mabrouk, Tim Werner, Michael Schneider, Ines Putz and Oliver Brock

    Version of Record online : 26 NOV 2015, DOI: 10.1002/prot.24950

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    Assessment of CASP11 contact-assisted predictions

    Proteins: Structure, Function, and Bioinformatics

    Volume 84, Issue S1, September 2016, Pages: 164–180, Lisa N. Kinch, Wenlin Li, Bohdan Monastyrskyy, Andriy Kryshtafovych and Nick V. Grishin

    Version of Record online : 9 MAR 2016, DOI: 10.1002/prot.25020

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    Assessment of template-free modeling in CASP10 and ROLL

    Proteins: Structure, Function, and Bioinformatics

    Volume 82, Issue S2, February 2014, Pages: 57–83, Chin-Hsien Tai, Hongjun Bai, Todd J. Taylor and Byungkook Lee

    Version of Record online : 17 DEC 2013, DOI: 10.1002/prot.24470

  4. Assessment of CASP6 predictions for new and nearly new fold targets

    Proteins: Structure, Function, and Bioinformatics

    Volume 61, Issue S7, 2005, Pages: 67–83, James J. Vincent, Chin-Hsien Tai, B.K. Sathyanarayana and Byungkook Lee

    Version of Record online : 26 SEP 2005, DOI: 10.1002/prot.20722

  5. Princeton_TIGRESS: Protein geometry refinement using simulations and support vector machines

    Proteins: Structure, Function, and Bioinformatics

    Volume 82, Issue 5, May 2014, Pages: 794–814, George A. Khoury, Phanourios Tamamis, Neesha Pinnaduwage, James Smadbeck, Chris A. Kieslich and Christodoulos A. Floudas

    Version of Record online : 22 NOV 2013, DOI: 10.1002/prot.24459

  6. Princeton_TIGRESS 2.0: High refinement consistency and net gains through support vector machines and molecular dynamics in double-blind predictions during the CASP11 experiment

    Proteins: Structure, Function, and Bioinformatics

    Volume 85, Issue 6, June 2017, Pages: 1078–1098, George A. Khoury, James Smadbeck, Chris A. Kieslich, Alexandra J. Koskosidis, Yannis A. Guzman, Phanourios Tamamis and Christodoulos A. Floudas

    Version of Record online : 21 MAR 2017, DOI: 10.1002/prot.25274

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    Assessment of CASP8 structure predictions for template free targets

    Proteins: Structure, Function, and Bioinformatics

    Volume 77, Issue S9, 2009, Pages: 50–65, Moshe Ben-David, Orly Noivirt-Brik, Aviv Paz, Jaime Prilusky, Joel L. Sussman and Yaakov Levy

    Version of Record online : 21 AUG 2009, DOI: 10.1002/prot.22591

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    Assessment of CASP7 structure predictions for template free targets

    Proteins: Structure, Function, and Bioinformatics

    Volume 69, Issue S8, 2007, Pages: 57–67, Ralf Jauch, Hock Chuan Yeo, Prasanna R. Kolatkar and Neil D. Clarke

    Version of Record online : 25 SEP 2007, DOI: 10.1002/prot.21771

  9. Consistent refinement of submitted models at CASP using a knowledge-based potential

    Proteins: Structure, Function, and Bioinformatics

    Volume 78, Issue 12, September 2010, Pages: 2668–2678, Gaurav Chopra, Nir Kalisman and Michael Levitt

    Version of Record online : 1 JUN 2010, DOI: 10.1002/prot.22781

  10. MQAPsingle: A quasi single-model approach for estimation of the quality of individual protein structure models

    Proteins: Structure, Function, and Bioinformatics

    Volume 84, Issue 8, August 2016, Pages: 1021–1028, Marcin Pawlowski, Lukasz Kozlowski and Andrzej Kloczkowski

    Version of Record online : 24 MAY 2016, DOI: 10.1002/prot.24787

  11. WeFold: A coopetition for protein structure prediction

    Proteins: Structure, Function, and Bioinformatics

    Volume 82, Issue 9, September 2014, Pages: 1850–1868, George A. Khoury, Adam Liwo, Firas Khatib, Hongyi Zhou, Gaurav Chopra, Jaume Bacardit, Leandro O. Bortot, Rodrigo A. Faccioli, Xin Deng, Yi He, Pawel Krupa, Jilong Li, Magdalena A. Mozolewska, Adam K. Sieradzan, James Smadbeck, Tomasz Wirecki, Seth Cooper, Jeff Flatten, Kefan Xu, David Baker, Jianlin Cheng, Alexandre C. B. Delbem, Christodoulos A. Floudas, Chen Keasar, Michael Levitt, Zoran Popović, Harold A. Scheraga, Jeffrey Skolnick, Silvia N. Crivelli and Foldit Players

    Version of Record online : 8 JUL 2014, DOI: 10.1002/prot.24538

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    Assessment of the assessment: Evaluation of the model quality estimates in CASP10

    Proteins: Structure, Function, and Bioinformatics

    Volume 82, Issue S2, February 2014, Pages: 112–126, Andriy Kryshtafovych, Alessandro Barbato, Krzysztof Fidelis, Bohdan Monastyrskyy, Torsten Schwede and Anna Tramontano

    Version of Record online : 31 AUG 2013, DOI: 10.1002/prot.24347

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    Evaluation of free modeling targets in CASP11 and ROLL

    Proteins: Structure, Function, and Bioinformatics

    Volume 84, Issue S1, September 2016, Pages: 51–66, Lisa N. Kinch, Wenlin Li, Bohdan Monastyrskyy, Andriy Kryshtafovych and Nick V. Grishin

    Version of Record online : 20 JAN 2016, DOI: 10.1002/prot.24973

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    Methods of model accuracy estimation can help selecting the best models from decoy sets: Assessment of model accuracy estimations in CASP11

    Proteins: Structure, Function, and Bioinformatics

    Volume 84, Issue S1, September 2016, Pages: 349–369, Andriy Kryshtafovych, Alessandro Barbato, Bohdan Monastyrskyy, Krzysztof Fidelis, Torsten Schwede and Anna Tramontano

    Version of Record online : 28 SEP 2015, DOI: 10.1002/prot.24919

  15. MUFOLD-WQA: A new selective consensus method for quality assessment in protein structure prediction

    Proteins: Structure, Function, and Bioinformatics

    Volume 79, Issue S10, 2011, Pages: 185–195, Qingguo Wang, Kittinun Vantasin, Dong Xu and Yi Shang

    Version of Record online : 14 OCT 2011, DOI: 10.1002/prot.23185

  16. Selective refinement and selection of near-native models in protein structure prediction

    Proteins: Structure, Function, and Bioinformatics

    Volume 83, Issue 10, October 2015, Pages: 1823–1835, Jiong Zhang, Bogdan Barz, Jingfen Zhang, Dong Xu and Ioan Kosztin

    Version of Record online : 12 AUG 2015, DOI: 10.1002/prot.24866

  17. A multilayer evaluation approach for protein structure prediction and model quality assessment

    Proteins: Structure, Function, and Bioinformatics

    Volume 79, Issue S10, 2011, Pages: 172–184, Jingfen Zhang, Qingguo Wang, Kittinun Vantasin, Jiong Zhang, Zhiquan He, Ioan Kosztin, Yi Shang and Dong Xu

    Version of Record online : 14 OCT 2011, DOI: 10.1002/prot.23184

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    Assessment of global and local model quality in CASP8 using Pcons and ProQ

    Proteins: Structure, Function, and Bioinformatics

    Volume 77, Issue S9, 2009, Pages: 167–172, Per Larsson, Marcin J. Skwark, Björn Wallner and Arne Elofsson

    Version of Record online : 11 MAY 2009, DOI: 10.1002/prot.22476

  19. Information theory provides a comprehensive framework for the evaluation of protein structure predictions

    Proteins: Structure, Function, and Bioinformatics

    Volume 74, Issue 3, 15 February 2009, Pages: 701–711, Rosemarie Swanson, Marina Vannucci and Jerry W. Tsai

    Version of Record online : 14 AUG 2008, DOI: 10.1002/prot.22186

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    Progress from CASP6 to CASP7

    Proteins: Structure, Function, and Bioinformatics

    Volume 69, Issue S8, 2007, Pages: 194–207, Andriy Kryshtafovych, Krzysztof Fidelis and John Moult

    Version of Record online : 5 OCT 2007, DOI: 10.1002/prot.21769