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There are 5885 results for: content related to: CASP9 assessment of free modeling target predictions

  1. CASP9 target classification

    Proteins: Structure, Function, and Bioinformatics

    Volume 79, Issue S10, 2011, Pages: 21–36, Lisa N. Kinch, Shuoyong Shi, Hua Cheng, Qian Cong, Jimin Pei, Valerio Mariani, Torsten Schwede and Nick V. Grishin

    Article first published online : 14 OCT 2011, DOI: 10.1002/prot.23190

  2. CAD-score: A new contact area difference-based function for evaluation of protein structural models

    Proteins: Structure, Function, and Bioinformatics

    Volume 81, Issue 1, January 2013, Pages: 149–162, Kliment Olechnovič, Eleonora Kulberkytė and Česlovas Venclovas

    Article first published online : 29 SEP 2012, DOI: 10.1002/prot.24172

  3. Assessment of template based protein structure predictions in CASP9

    Proteins: Structure, Function, and Bioinformatics

    Volume 79, Issue S10, 2011, Pages: 37–58, Valerio Mariani, Florian Kiefer, Tobias Schmidt, Juergen Haas and Torsten Schwede

    Article first published online : 15 OCT 2011, DOI: 10.1002/prot.23177

  4. You have free access to this content
    The other 90% of the protein: Assessment beyond the Cαs for CASP8 template-based and high-accuracy models

    Proteins: Structure, Function, and Bioinformatics

    Volume 77, Issue S9, 2009, Pages: 29–49, Daniel A. Keedy, Christopher J. Williams, Jeffrey J. Headd, W. Bryan Arendall III, Vincent B. Chen, Gary J. Kapral, Robert A. Gillespie, Jeremy N. Block, Adam Zemla, David C. Richardson and Jane S. Richardson

    Article first published online : 20 JUL 2009, DOI: 10.1002/prot.22551

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    Assessment of template-free modeling in CASP10 and ROLL

    Proteins: Structure, Function, and Bioinformatics

    Volume 82, Issue S2, February 2014, Pages: 57–83, Chin-Hsien Tai, Hongjun Bai, Todd J. Taylor and Byungkook Lee

    Article first published online : 17 DEC 2013, DOI: 10.1002/prot.24470

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    Assessment of CASP8 structure predictions for template free targets

    Proteins: Structure, Function, and Bioinformatics

    Volume 77, Issue S9, 2009, Pages: 50–65, Moshe Ben-David, Orly Noivirt-Brik, Aviv Paz, Jaime Prilusky, Joel L. Sussman and Yaakov Levy

    Article first published online : 21 AUG 2009, DOI: 10.1002/prot.22591

  7. CASP9 results compared to those of previous casp experiments

    Proteins: Structure, Function, and Bioinformatics

    Volume 79, Issue S10, 2011, Pages: 196–207, Andriy Kryshtafovych, Krzysztof Fidelis and John Moult

    Article first published online : 14 OCT 2011, DOI: 10.1002/prot.23182

  8. 3Drefine: Consistent protein structure refinement by optimizing hydrogen bonding network and atomic-level energy minimization

    Proteins: Structure, Function, and Bioinformatics

    Volume 81, Issue 1, January 2013, Pages: 119–131, Debswapna Bhattacharya and Jianlin Cheng

    Article first published online : 26 SEP 2012, DOI: 10.1002/prot.24167

  9. Refinement of unreliable local regions in template-based protein models

    Proteins: Structure, Function, and Bioinformatics

    Volume 80, Issue 8, August 2012, Pages: 1974–1986, Hahnbeom Park and Chaok Seok

    Article first published online : 23 MAY 2012, DOI: 10.1002/prot.24086

  10. Predicted residue–residue contacts can help the scoring of 3D models

    Proteins: Structure, Function, and Bioinformatics

    Volume 78, Issue 8, June 2010, Pages: 1980–1991, Michael L. Tress and Alfonso Valencia

    Article first published online : 12 MAR 2010, DOI: 10.1002/prot.22714

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    Assessment of the protein-structure refinement category in CASP8

    Proteins: Structure, Function, and Bioinformatics

    Volume 77, Issue S9, 2009, Pages: 66–80, Justin L. MacCallum, Lan Hua, Michael J. Schnieders, Vijay S. Pande, Matthew P. Jacobson and Ken A. Dill

    Article first published online : 20 JUL 2009, DOI: 10.1002/prot.22538

  12. Does the feedback from previous trials influence current decisions? A study on the role of feedback processing in making decisions under explicit risk conditions

    Journal of Neuropsychology

    Volume 2, Issue 2, September 2008, Pages: 431–443, Matthias. Brand

    Article first published online : 24 DEC 2010, DOI: 10.1348/174866407X220607

  13. Assessment of CASP6 predictions for new and nearly new fold targets

    Proteins: Structure, Function, and Bioinformatics

    Volume 61, Issue S7, 2005, Pages: 67–83, James J. Vincent, Chin-Hsien Tai, B.K. Sathyanarayana and Byungkook Lee

    Article first published online : 26 SEP 2005, DOI: 10.1002/prot.20722

  14. A multilayer evaluation approach for protein structure prediction and model quality assessment

    Proteins: Structure, Function, and Bioinformatics

    Volume 79, Issue S10, 2011, Pages: 172–184, Jingfen Zhang, Qingguo Wang, Kittinun Vantasin, Jiong Zhang, Zhiquan He, Ioan Kosztin, Yi Shang and Dong Xu

    Article first published online : 14 OCT 2011, DOI: 10.1002/prot.23184

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    Structure prediction for CASP8 with all-atom refinement using Rosetta

    Proteins: Structure, Function, and Bioinformatics

    Volume 77, Issue S9, 2009, Pages: 89–99, Srivatsan Raman, Robert Vernon, James Thompson, Michael Tyka, Ruslan Sadreyev, Jimin Pei, David Kim, Elizabeth Kellogg, Frank DiMaio, Oliver Lange, Lisa Kinch, Will Sheffler, Bong-Hyun Kim, Rhiju Das, Nick V. Grishin and David Baker

    Article first published online : 20 JUL 2009, DOI: 10.1002/prot.22540

  16. Assessment of fold recognition predictions in CASP6

    Proteins: Structure, Function, and Bioinformatics

    Volume 61, Issue S7, 2005, Pages: 46–66, Guoli Wang, Yumi Jin and Roland L. Dunbrack Jr.

    Article first published online : 26 SEP 2005, DOI: 10.1002/prot.20721

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    Assessment of CASP7 structure predictions for template free targets

    Proteins: Structure, Function, and Bioinformatics

    Volume 69, Issue S8, 2007, Pages: 57–67, Ralf Jauch, Hock Chuan Yeo, Prasanna R. Kolatkar and Neil D. Clarke

    Article first published online : 25 SEP 2007, DOI: 10.1002/prot.21771

  18. Consistent refinement of submitted models at CASP using a knowledge-based potential

    Proteins: Structure, Function, and Bioinformatics

    Volume 78, Issue 12, September 2010, Pages: 2668–2678, Gaurav Chopra, Nir Kalisman and Michael Levitt

    Article first published online : 1 JUN 2010, DOI: 10.1002/prot.22781

  19. Refinement of protein structure homology models via long, all-atom molecular dynamics simulations

    Proteins: Structure, Function, and Bioinformatics

    Volume 80, Issue 8, August 2012, Pages: 2071–2079, Alpan Raval, Stefano Piana, Michael P. Eastwood, Ron O. Dror and David E. Shaw

    Article first published online : 14 MAY 2012, DOI: 10.1002/prot.24098

  20. Assessment of predictions submitted for the CASP6 comparative modeling category

    Proteins: Structure, Function, and Bioinformatics

    Volume 61, Issue S7, 2005, Pages: 27–45, Michael Tress, Iakes Ezkurdia, Osvaldo Graña, Gonzalo López and Alfonso Valencia

    Article first published online : 26 SEP 2005, DOI: 10.1002/prot.20720