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There are 12736 results for: content related to: The dual role of fragments in fragment-assembly methods for de novo protein structure prediction

  1. You have full text access to this OnlineOpen article
    Toward a detailed understanding of search trajectories in fragment assembly approaches to protein structure prediction

    Proteins: Structure, Function, and Bioinformatics

    Volume 84, Issue 4, April 2016, Pages: 411–426, Shaun M. Kandathil, Julia Handl and Simon C. Lovell

    Version of Record online : 23 FEB 2016, DOI: 10.1002/prot.24987

  2. Improving fragment quality for de novo structure prediction

    Proteins: Structure, Function, and Bioinformatics

    Volume 82, Issue 9, September 2014, Pages: 2240–2252, Rojan Shrestha and Kam Y. J. Zhang

    Version of Record online : 2 MAY 2014, DOI: 10.1002/prot.24587

  3. SimFold energy function for de novo protein structure prediction: Consensus with Rosetta

    Proteins: Structure, Function, and Bioinformatics

    Volume 62, Issue 2, 1 February 2006, Pages: 381–398, Yoshimi Fujitsuka, George Chikenji and Shoji Takada

    Version of Record online : 17 NOV 2005, DOI: 10.1002/prot.20748

  4. You have full text access to this OnlineOpen article
    Resolution-adapted recombination of structural features significantly improves sampling in restraint-guided structure calculation

    Proteins: Structure, Function, and Bioinformatics

    Volume 80, Issue 3, March 2012, Pages: 884–895, Oliver F. Lange and David Baker

    Version of Record online : 23 DEC 2011, DOI: 10.1002/prot.23245

  5. You have free access to this content
    De novo structure generation using chemical shifts for proteins with high-sequence identity but different folds

    Protein Science

    Volume 19, Issue 2, February 2010, Pages: 349–356, Yang Shen, Philip N. Bryan, Yanan He, John Orban, David Baker and Ad Bax

    Version of Record online : 8 DEC 2009, DOI: 10.1002/pro.303

  6. You have full text access to this OnlineOpen article
    Structure-guided forcefield optimization

    Proteins: Structure, Function, and Bioinformatics

    Volume 79, Issue 6, June 2011, Pages: 1898–1909, Yifan Song, Michael Tyka, Andrew Leaver-Fay, James Thompson and David Baker

    Version of Record online : 12 APR 2011, DOI: 10.1002/prot.23013

  7. Systematic evaluation of CS-Rosetta for membrane protein structure prediction with sparse NOE restraints

    Proteins: Structure, Function, and Bioinformatics

    Volume 85, Issue 5, May 2017, Pages: 812–826, Katrin Reichel, Olivier Fisette, Tatjana Braun, Oliver F. Lange, Gerhard Hummer and Lars V. Schäfer

    Version of Record online : 28 FEB 2017, DOI: 10.1002/prot.25224

  8. Modeling structurally variable regions in homologous proteins with rosetta

    Proteins: Structure, Function, and Bioinformatics

    Volume 55, Issue 3, 15 May 2004, Pages: 656–677, Carol A. Rohl, Charlie E.M. Strauss, Dylan Chivian and David Baker

    Version of Record online : 1 APR 2004, DOI: 10.1002/prot.10629

  9. You have free access to this content
    Contact order and ab initio protein structure prediction

    Protein Science

    Volume 11, Issue 8, August 2002, Pages: 1937–1944, Richard Bonneau, Ingo Ruczinski, Jerry Tsai and David Baker

    Version of Record online : 1 JAN 2009, DOI: 10.1110/ps.3790102

  10. You have free access to this content
    Some fundamental aspects of building protein structures from fragment libraries

    Protein Science

    Volume 13, Issue 6, June 2004, Pages: 1636–1650, J. Bradley Holmes and Jerry Tsai

    Version of Record online : 1 JAN 2009, DOI: 10.1110/ps.03494504

  11. Balancing exploration and exploitation in population-based sampling improves fragment-based de novo protein structure prediction

    Proteins: Structure, Function, and Bioinformatics

    Volume 85, Issue 5, May 2017, Pages: 852–858, David Simoncini, Thomas Schiex and Kam Y.J. Zhang

    Version of Record online : 3 MAR 2017, DOI: 10.1002/prot.25244

  12. Ab initio protein structure assembly using continuous structure fragments and optimized knowledge-based force field

    Proteins: Structure, Function, and Bioinformatics

    Volume 80, Issue 7, July 2012, Pages: 1715–1735, Dong Xu and Yang Zhang

    Version of Record online : 13 APR 2012, DOI: 10.1002/prot.24065

  13. Rosetta comparative modeling for library design: Engineering alternative inducer specificity in a transcription factor

    Proteins: Structure, Function, and Bioinformatics

    Volume 83, Issue 7, July 2015, Pages: 1327–1340, Ramesh K. Jha, Subhendu Chakraborti, Theresa L. Kern, David T. Fox and Charlie E. M. Strauss

    Version of Record online : 29 MAY 2015, DOI: 10.1002/prot.24828

  14. You have free access to this content
    Fragment-HMM: A new approach to protein structure prediction

    Protein Science

    Volume 17, Issue 11, November 2008, Pages: 1925–1934, Shuai Cheng Li, Dongbo Bu, Jinbo Xu and Ming Li

    Version of Record online : 2 JAN 2009, DOI: 10.1110/ps.036442.108

  15. De Novo Structure Prediction: Methods and Applications

    Bioinformatics - From Genomes to Therapies

    Thomas Lengauer, Pages: 389–418, 2008

    Published Online : 5 FEB 2008, DOI: 10.1002/9783527619368.ch12

  16. Residue-centric modeling and design of saccharide and glycoconjugate structures

    Journal of Computational Chemistry

    Volume 38, Issue 5, February 15, 2017, Pages: 276–287, Jason W. Labonte, Jared Adolf-Bryfogle, William R. Schief and Jeffrey J. Gray

    Version of Record online : 30 NOV 2016, DOI: 10.1002/jcc.24679

    Corrected by:

    Erratum: Erratum

    Vol. 38, Issue 13, 1015, Version of Record online: 16 MAR 2017

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    Analysis of free modeling predictions by RBO aleph in CASP11

    Proteins: Structure, Function, and Bioinformatics

    Volume 84, Issue S1, September 2016, Pages: 87–104, Mahmoud Mabrouk, Tim Werner, Michael Schneider, Ines Putz and Oliver Brock

    Version of Record online : 26 NOV 2015, DOI: 10.1002/prot.24950

  18. Helix-sheet packing in proteins

    Proteins: Structure, Function, and Bioinformatics

    Volume 78, Issue 7, 15 May 2010, Pages: 1736–1747, Chengcheng Hu and Patrice Koehl

    Version of Record online : 20 JAN 2010, DOI: 10.1002/prot.22688

  19. Guiding conformation space search with an all-atom energy potential

    Proteins: Structure, Function, and Bioinformatics

    Volume 73, Issue 4, December 2008, Pages: 958–972, TJ Brunette and Oliver Brock

    Version of Record online : 5 JUN 2008, DOI: 10.1002/prot.22123

  20. Assessing protein conformational sampling and structural stability via de novo design and molecular dynamics simulations

    Biopolymers

    Volume 103, Issue 6, June 2015, Pages: 351–361, Keila C. Cunha, Victor H. Rusu, Isabelle F. T. Viana, Ernesto T. A. Marques, Rafael Dhalia and Roberto D. Lins

    Version of Record online : 21 MAR 2015, DOI: 10.1002/bip.22626