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There are 11290 results for: content related to: Dead-end elimination with perturbations (DEEPer): A provable protein design algorithm with continuous sidechain and backbone flexibility

  1. Computational protein design with a generalized born solvent model: Application to asparaginyl-tRNA synthetase

    Proteins: Structure, Function, and Bioinformatics

    Volume 79, Issue 12, December 2011, Pages: 3448–3468, Savvas Polydorides, Najette Amara, Caroline Aubard, Pierre Plateau, Thomas Simonson and Georgios Archontis

    Article first published online : 11 MAY 2011, DOI: 10.1002/prot.23042

  2. Computational sidechain placement and protein mutagenesis with implicit solvent models

    Proteins: Structure, Function, and Bioinformatics

    Volume 67, Issue 4, June 2007, Pages: 853–867, Anne Lopes, Alexey Alexandrov, Christine Bathelt, Georgios Archontis and Thomas Simonson

    Article first published online : 8 MAR 2007, DOI: 10.1002/prot.21379

  3. Rodlet cells in teleosts: a new insight into their nature and functions

    Journal of Fish Biology

    Volume 65, Issue 3, September 2004, Pages: 597–619, M. Manera and B. S. Dezfuli

    Article first published online : 27 AUG 2004, DOI: 10.1111/j.0022-1112.2004.00511.x

  4. You have free access to this content
    Chloroplastic NADPH-dependent alkenal/one oxidoreductase contributes to the detoxification of reactive carbonyls produced under oxidative stress

    FEBS Letters

    Volume 586, Issue 8, April 24, 2012, Pages: 1208–1213, Yasuo Yamauchi, Ayaka Hasegawa, Masaharu Mizutani and Yukihiro Sugimoto

    Article first published online : 17 MAR 2012, DOI: 10.1016/j.febslet.2012.03.013

  5. Conformational studies of antimetastatic laminin-1 derived peptides in different solvent systems, using solution NMR spectroscopy

    The Journal of Peptide Research

    Volume 61, Issue 1, January 2003, Pages: 24–39, M. Jaseja, V. Copié and J. Starkey

    Article first published online : 11 DEC 2002, DOI: 10.1034/j.1399-3011.2003.21040.x

  6. You have full text access to this OnlineOpen article
    Structure-guided forcefield optimization

    Proteins: Structure, Function, and Bioinformatics

    Volume 79, Issue 6, June 2011, Pages: 1898–1909, Yifan Song, Michael Tyka, Andrew Leaver-Fay, James Thompson and David Baker

    Article first published online : 12 APR 2011, DOI: 10.1002/prot.23013

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    A simple reference state makes a significant improvement in near-native selections from structurally refined docking decoys

    Proteins: Structure, Function, and Bioinformatics

    Volume 69, Issue 2, 1 November 2007, Pages: 244–253, Shide Liang, Song Liu, Chi Zhang and Yaoqi Zhou

    Article first published online : 10 JUL 2007, DOI: 10.1002/prot.21498

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    Conserved tertiary couplings stabilize elements in the PDZ fold, leading to characteristic patterns of domain conformational flexibility

    Protein Science

    Volume 19, Issue 3, March 2010, Pages: 398–411, Bosco K. Ho and David A. Agard

    Article first published online : 5 JAN 2010, DOI: 10.1002/pro.318

  9. Satisfaction of hydrogen-bonding potential influences the conservation of polar sidechains

    Proteins: Structure, Function, and Bioinformatics

    Volume 75, Issue 2, 1 May 2009, Pages: 413–429, Catherine L. Worth and Tom L. Blundell

    Article first published online : 2 SEP 2008, DOI: 10.1002/prot.22248

  10. Protein:Ligand binding free energies: A stringent test for computational protein design

    Journal of Computational Chemistry

    Volume 37, Issue 4, February 5, 2016, Pages: 404–415, Karen Druart, Zoltan Palmai, Eyaz Omarjee and Thomas Simonson

    Article first published online : 27 OCT 2015, DOI: 10.1002/jcc.24230

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    The other 90% of the protein: Assessment beyond the Cαs for CASP8 template-based and high-accuracy models

    Proteins: Structure, Function, and Bioinformatics

    Volume 77, Issue S9, 2009, Pages: 29–49, Daniel A. Keedy, Christopher J. Williams, Jeffrey J. Headd, W. Bryan Arendall III, Vincent B. Chen, Gary J. Kapral, Robert A. Gillespie, Jeremy N. Block, Adam Zemla, David C. Richardson and Jane S. Richardson

    Article first published online : 20 JUL 2009, DOI: 10.1002/prot.22551

  12. TOUCHSTONEX: Protein structure prediction with sparse NMR data

    Proteins: Structure, Function, and Bioinformatics

    Volume 53, Issue 2, 1 November 2003, Pages: 290–306, Wei Li, Yang Zhang, Daisuke Kihara, Yuanpeng Janet Huang, Deyou Zheng, Gaetano T. Montelione, Andrzej Kolinski and Jeffrey Skolnick

    Article first published online : 3 SEP 2003, DOI: 10.1002/prot.10499

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    Release of rabbit aorta contracting substance (RCS) and prostaglandins induced by chemical or mechanical stimulation of guinea-pig lungs

    British Journal of Pharmacology

    Volume 49, Issue 2, October 1973, Pages: 226–242, M. A. PALMER, PRISCILLA J. PIPER and J. R. VANE

    Article first published online : 19 JUL 2012, DOI: 10.1111/j.1476-5381.1973.tb08368.x

  14. Monte carlo simulations of proteins at constant pH with generalized born solvent, flexible sidechains, and an effective dielectric boundary

    Journal of Computational Chemistry

    Volume 34, Issue 31, 5 December 2013, Pages: 2742–2756, Savvas Polydorides and Thomas Simonson

    Article first published online : 5 OCT 2013, DOI: 10.1002/jcc.23450

  15. Role of conformational sampling in computing mutation-induced changes in protein structure and stability

    Proteins: Structure, Function, and Bioinformatics

    Volume 79, Issue 3, March 2011, Pages: 830–838, Elizabeth H. Kellogg, Andrew Leaver-Fay and David Baker

    Article first published online : 3 DEC 2010, DOI: 10.1002/prot.22921

  16. Computational protein design: The proteus software and selected applications

    Journal of Computational Chemistry

    Volume 34, Issue 28, 30 October 2013, Pages: 2472–2484, Thomas Simonson, Thomas Gaillard, David Mignon, Marcel Schmidt am Busch, Anne Lopes, Najette Amara, Savvas Polydorides, Audrey Sedano, Karen Druart and Georgios Archontis

    Article first published online : 26 AUG 2013, DOI: 10.1002/jcc.23418

  17. Conformational analyses of a partially-folded bioactive prodomain of human furin

    Biopolymers

    Volume 86, Issue 4, July 2007, Pages: 329–344, Surajit Bhattacharjya, Ping Xu, Ping Wang, Michael J. Osborne and Feng Ni

    Article first published online : 3 MAY 2007, DOI: 10.1002/bip.20748

  18. Effects of protonation state of Asp181 and position of active site water molecules on the conformation of PTP1B

    Proteins: Structure, Function, and Bioinformatics

    Volume 81, Issue 5, May 2013, Pages: 788–804, Ahmet Özcan, Elif Ozkirimli Olmez and Burak Alakent

    Article first published online : 15 JAN 2013, DOI: 10.1002/prot.24234

  19. Seasonal changes in intra- and interorgan occurrence of rodlet cells in freshwater bream

    Journal of Fish Biology

    Volume 56, Issue 2, February 2000, Pages: 250–263, K. Koponen and M. S. Myers

    Article first published online : 19 APR 2005, DOI: 10.1111/j.1095-8649.2000.tb02104.x

  20. An improved pairwise decomposable finite-difference Poisson–Boltzmann method for computational protein design

    Journal of Computational Chemistry

    Volume 29, Issue 7, May 2008, Pages: 1153–1162, Christina L. Vizcarra, Naigong Zhang, Shannon A. Marshall, Ned S. Wingreen, Chen Zeng and Stephen L. Mayo

    Article first published online : 11 DEC 2007, DOI: 10.1002/jcc.20878