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There are 15934 results for: content related to: Swfoldrate: Predicting protein folding rates from amino acid sequence with sliding window method

  1. Nucleation-based prediction of the protein folding rate and its correlation with the folding nucleus size

    Proteins: Structure, Function, and Bioinformatics

    Volume 80, Issue 12, December 2012, Pages: 2711–2727, Oxana V. Galzitskaya and Anna V. Glyakina

    Article first published online : 15 SEP 2012, DOI: 10.1002/prot.24156

  2. Sequence determinants of protein folding rates: Positive correlation between contact energy and contact range indicates selection for fast folding

    Proteins: Structure, Function, and Bioinformatics

    Volume 80, Issue 9, August 2012, Pages: 2287–2304, Ugo Bastolla, Pierpaolo Bruscolini and José Luis Velasco

    Article first published online : 18 JUN 2012, DOI: 10.1002/prot.24118

  3. Accurate prediction of protein folding rates from sequence and sequence-derived residue flexibility and solvent accessibility

    Proteins: Structure, Function, and Bioinformatics

    Volume 78, Issue 9, July 2010, Pages: 2114–2130, Jianzhao Gao, Tuo Zhang, Hua Zhang, Shiyi Shen, Jishou Ruan and Lukasz Kurgan

    Article first published online : 23 MAR 2010, DOI: 10.1002/prot.22727

  4. Choice of synonymous codons associated with protein folding

    Proteins: Structure, Function, and Bioinformatics

    Volume 80, Issue 8, August 2012, Pages: 2056–2062, Jitao T. Huang, Dajie J. Xing and Wei Huang

    Article first published online : 23 MAY 2012, DOI: 10.1002/prot.24096

  5. Direct correlation between proteins' folding rates and their amino acid compositions: An ab initio folding rate prediction

    Proteins: Structure, Function, and Bioinformatics

    Volume 65, Issue 2, 1 November 2006, Pages: 362–372, Bin-Guang Ma, Jian-Xiu Guo and Hong-Yu Zhang

    Article first published online : 25 AUG 2006, DOI: 10.1002/prot.21140

  6. Validating the vitality strategy for fighting drug resistance

    Proteins: Structure, Function, and Bioinformatics

    Volume 80, Issue 4, April 2012, Pages: 1110–1122, Nidhi Singh, Maria P. Frushicheva and Arieh Warshel

    Article first published online : 31 JAN 2012, DOI: 10.1002/prot.24012

  7. Conformational selection and induced changes along the catalytic cycle of Escherichia coli dihydrofolate reductase

    Proteins: Structure, Function, and Bioinformatics

    Volume 80, Issue 10, October 2012, Pages: 2369–2383, Thomas R. Weikl and David D. Boehr

    Article first published online : 3 JUL 2012, DOI: 10.1002/prot.24123

  8. Sequential four-state folding/unfolding of goat α-lactalbumin and its N-terminal variants

    Proteins: Structure, Function, and Bioinformatics

    Volume 80, Issue 9, August 2012, Pages: 2191–2206, Katsuaki Tomoyori, Takashi Nakamura, Koki Makabe, Kosuke Maki, Kimiko Saeki and Kunihiro Kuwajima

    Article first published online : 18 JUN 2012, DOI: 10.1002/prot.24109

  9. Geofold: Topology-based protein unfolding pathways capture the effects of engineered disulfides on kinetic stability

    Proteins: Structure, Function, and Bioinformatics

    Volume 80, Issue 3, March 2012, Pages: 920–934, Vibin Ramakrishnan, Sai Praveen Srinivasan, Saeed M. Salem, Suzanne J. Matthews, Wilfredo Colón, Mohammed Zaki and Christopher Bystroff

    Article first published online : 21 DEC 2011, DOI: 10.1002/prot.23249

  10. You have free access to this content
    Routes are trees: The parsing perspective on protein folding

    Proteins: Structure, Function, and Bioinformatics

    Volume 66, Issue 1, January 2007, Pages: 1–15, Julia Hockenmaier, Aravind K. Joshi and Ken A. Dill

    Article first published online : 24 OCT 2006, DOI: 10.1002/prot.21195

  11. Some recommendations for the practitioner to improve the precision of experimentally determined protein folding rates and ϕ values

    Proteins: Structure, Function, and Bioinformatics

    Volume 74, Issue 2, 1 February 2009, Pages: 461–474, Ingo Ruczinski and Kevin W. Plaxco

    Article first published online : 24 JUL 2008, DOI: 10.1002/prot.22155

  12. A dynamic model for processive transcription elongation and backtracking long pauses by multisubunit RNA polymerases

    Proteins: Structure, Function, and Bioinformatics

    Volume 80, Issue 8, August 2012, Pages: 2020–2034, Ping Xie

    Article first published online : 17 MAY 2012, DOI: 10.1002/prot.24090

  13. Temperature and pressure denaturation of chignolin: Folding and unfolding simulation by multibaric-multithermal molecular dynamics method

    Proteins: Structure, Function, and Bioinformatics

    Volume 80, Issue 10, October 2012, Pages: 2397–2416, Hisashi Okumura

    Article first published online : 10 JUL 2012, DOI: 10.1002/prot.24125

  14. Calculation of rate spectra from noisy time series data

    Proteins: Structure, Function, and Bioinformatics

    Volume 80, Issue 2, February 2012, Pages: 342–351, Vincent A. Voelz and Vijay S. Pande

    Article first published online : 17 NOV 2011, DOI: 10.1002/prot.23171

  15. Detection of multiscale pockets on protein surfaces using mathematical morphology

    Proteins: Structure, Function, and Bioinformatics

    Volume 78, Issue 5, April 2010, Pages: 1195–1211, Takeshi Kawabata

    Article first published online : 16 OCT 2009, DOI: 10.1002/prot.22639

  16. You have free access to this content
    Backbone dynamics, fast folding, and secondary structure formation in helical proteins and peptides

    Proteins: Structure, Function, and Bioinformatics

    Volume 34, Issue 3, 15 February 1999, Pages: 281–294, Corey Hardin, Zaida Luthey-Schulten and Peter G. Wolynes

    Article first published online : 1 OCT 1999, DOI: 10.1002/(SICI)1097-0134(19990215)34:3<281::AID-PROT2>3.0.CO;2-2

  17. Modeling protein density of states: Additive hydrophobic effects are insufficient for calorimetric two-state cooperativity

    Proteins: Structure, Function, and Bioinformatics

    Volume 40, Issue 4, 1 September 2000, Pages: 543–571, Hue Sun Chan

    Article first published online : 28 JUN 2000, DOI: 10.1002/1097-0134(20000901)40:4<543::AID-PROT20>3.0.CO;2-O

  18. A miniaturized technique for assessing protein thermodynamics and function using fast determination of quantitative cysteine reactivity

    Proteins: Structure, Function, and Bioinformatics

    Volume 79, Issue 4, April 2011, Pages: 1034–1047, Daniel G. Isom, Philippe R. Marguet, Terrence G. Oas and Homme W. Hellinga

    Article first published online : 5 JAN 2011, DOI: 10.1002/prot.22932

  19. Kinetic consequences of native state optimization of surface-exposed electrostatic interactions in the Fyn SH3 domain

    Proteins: Structure, Function, and Bioinformatics

    Volume 80, Issue 3, March 2012, Pages: 858–870, Arash Zarrine-Afsar, Zhuqing Zhang, Katrina L. Schweiker, George I. Makhatadze, Alan R. Davidson and Hue Sun Chan

    Article first published online : 13 DEC 2011, DOI: 10.1002/prot.23243

  20. Role of electrostatic interactions for the stability and folding behavior of cold shock protein

    Proteins: Structure, Function, and Bioinformatics

    Volume 78, Issue 9, July 2010, Pages: 2157–2169, Ji Guo Su, Wei Zu Chen and Cun Xin Wang

    Article first published online : 23 MAR 2010, DOI: 10.1002/prot.22730