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There are 18054 results for: content related to: Swfoldrate: Predicting protein folding rates from amino acid sequence with sliding window method

  1. Analysis and prediction of protein folding rates using quadratic response surface models

    Journal of Computational Chemistry

    Volume 29, Issue 10, 30 July 2008, Pages: 1675–1683, Liang-Tsung Huang and M. Michael Gromiha

    Version of Record online : 19 MAR 2008, DOI: 10.1002/jcc.20925

  2. Accurate prediction of protein folding rates from sequence and sequence-derived residue flexibility and solvent accessibility

    Proteins: Structure, Function, and Bioinformatics

    Volume 78, Issue 9, July 2010, Pages: 2114–2130, Jianzhao Gao, Tuo Zhang, Hua Zhang, Shiyi Shen, Jishou Ruan and Lukasz Kurgan

    Version of Record online : 23 MAR 2010, DOI: 10.1002/prot.22727

  3. Predicting protein folding rates using the concept of Chou's pseudo amino acid composition

    Journal of Computational Chemistry

    Volume 32, Issue 8, June 2011, Pages: 1612–1617, Jianxiu Guo, Nini Rao, Guangxiong Liu, Yong Yang and Gang Wang

    Version of Record online : 15 FEB 2011, DOI: 10.1002/jcc.21740

  4. Nucleation-based prediction of the protein folding rate and its correlation with the folding nucleus size

    Proteins: Structure, Function, and Bioinformatics

    Volume 80, Issue 12, December 2012, Pages: 2711–2727, Oxana V. Galzitskaya and Anna V. Glyakina

    Version of Record online : 15 SEP 2012, DOI: 10.1002/prot.24156

  5. Sequence determinants of protein folding rates: Positive correlation between contact energy and contact range indicates selection for fast folding

    Proteins: Structure, Function, and Bioinformatics

    Volume 80, Issue 9, August 2012, Pages: 2287–2304, Ugo Bastolla, Pierpaolo Bruscolini and José Luis Velasco

    Version of Record online : 18 JUN 2012, DOI: 10.1002/prot.24118

  6. Reduced alphabet for protein folding prediction

    Proteins: Structure, Function, and Bioinformatics

    Volume 83, Issue 4, April 2015, Pages: 631–639, Jitao T. Huang, Titi Wang, Shanran R. Huang and Xin Li

    Version of Record online : 5 FEB 2015, DOI: 10.1002/prot.24762

  7. Refinement of the long-range order parameter in predicting folding rates of two-state proteins

    Biopolymers

    Volume 91, Issue 11, November 2009, Pages: 928–935, B. Harihar and S. Selvaraj

    Version of Record online : 14 JUL 2009, DOI: 10.1002/bip.21281

  8. You have free access to this content
    Predicting protein folding rates from geometric contact and amino acid sequence

    Protein Science

    Volume 17, Issue 7, July 2008, Pages: 1256–1263, Zheng Ouyang and Jie Liang

    Version of Record online : 2 JAN 2009, DOI: 10.1110/ps.034660.108

  9. Direct correlation between proteins' folding rates and their amino acid compositions: An ab initio folding rate prediction

    Proteins: Structure, Function, and Bioinformatics

    Volume 65, Issue 2, 1 November 2006, Pages: 362–372, Bin-Guang Ma, Jian-Xiu Guo and Hong-Yu Zhang

    Version of Record online : 25 AUG 2006, DOI: 10.1002/prot.21140

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    Protein unfolding rates correlate as strongly as folding rates with native structure

    Protein Science

    Volume 24, Issue 4, April 2015, Pages: 580–587, Aron Broom, Shachi Gosavi and Elizabeth M. Meiering

    Version of Record online : 26 DEC 2014, DOI: 10.1002/pro.2606

  11. Funnel-like organization in sequence space determines the distributions of protein stability and folding rate preferred by evolution

    Proteins: Structure, Function, and Bioinformatics

    Volume 55, Issue 1, April 2004, Pages: 107–114, Yu Xia and Michael Levitt

    Version of Record online : 5 FEB 2004, DOI: 10.1002/prot.10563

  12. Secondary structure length as a determinant of folding rate of proteins with two- and three-state kinetics

    Proteins: Structure, Function, and Bioinformatics

    Volume 67, Issue 1, April 2007, Pages: 12–17, Ji-Tao Huang, Jin-Pei Cheng and Hui Chen

    Version of Record online : 5 JAN 2007, DOI: 10.1002/prot.21282

  13. Entropy capacity determines protein folding

    Proteins: Structure, Function, and Bioinformatics

    Volume 63, Issue 1, 1 April 2006, Pages: 144–154, Oxana V. Galzitskaya and Sergiy O. Garbuzynskiy

    Version of Record online : 6 JAN 2006, DOI: 10.1002/prot.20851

  14. A simple measure of native-state topology and chain connectivity predicts the folding rates of two-state proteins with and without crosslinks

    Proteins: Structure, Function, and Bioinformatics

    Volume 64, Issue 1, 1 July 2006, Pages: 193–197, Purushottam D. Dixit and Thomas R. Weikl

    Version of Record online : 4 APR 2006, DOI: 10.1002/prot.20976

  15. How the folding rates of two- and multistate proteins depend on the amino acid properties

    Proteins: Structure, Function, and Bioinformatics

    Volume 82, Issue 10, October 2014, Pages: 2375–2382, Jitao T. Huang, Wei Huang, Shanran R. Huang and Xin Li

    Version of Record online : 9 JUN 2014, DOI: 10.1002/prot.24599

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    The topomer search model: A simple, quantitative theory of two-state protein folding kinetics

    Protein Science

    Volume 12, Issue 1, January 2003, Pages: 17–26, Dmitrii E. Makarov and Kevin W. Plaxco

    Version of Record online : 1 JAN 2009, DOI: 10.1110/ps.0220003

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    A contact-waiting-time metric and RNA folding rates

    FEBS Letters

    Volume 583, Issue 14, July 21, 2009, Pages: 2392–2394, Asamoah Nkwanta and Wilfred Ndifon

    Version of Record online : 26 JUN 2009, DOI: 10.1016/j.febslet.2009.06.038

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    Co-evolutionary constraints of globular proteins correlate with their folding rates

    FEBS Letters

    Volume 589, Issue 17, August 04, 2015, Pages: 2179–2185, Saurav Mallik and Sudip Kundu

    Version of Record online : 8 JUL 2015, DOI: 10.1016/j.febslet.2015.06.032

  19. Choice of synonymous codons associated with protein folding

    Proteins: Structure, Function, and Bioinformatics

    Volume 80, Issue 8, August 2012, Pages: 2056–2062, Jitao T. Huang, Dajie J. Xing and Wei Huang

    Version of Record online : 23 MAY 2012, DOI: 10.1002/prot.24096

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    Critical nucleation size in the folding of small apparently two-state proteins

    Protein Science

    Volume 13, Issue 5, May 2004, Pages: 1173–1181, Yawen Bai, Hongyi Zhou and Yaoqi Zhou

    Version of Record online : 1 JAN 2009, DOI: 10.1110/ps.03587604