Search Results

There are 11581 results for: content related to: CAD-score: A new contact area difference-based function for evaluation of protein structural models

  1. 3Drefine: Consistent protein structure refinement by optimizing hydrogen bonding network and atomic-level energy minimization

    Proteins: Structure, Function, and Bioinformatics

    Volume 81, Issue 1, January 2013, Pages: 119–131, Debswapna Bhattacharya and Jianlin Cheng

    Version of Record online : 26 SEP 2012, DOI: 10.1002/prot.24167

  2. CASP9 assessment of free modeling target predictions

    Proteins: Structure, Function, and Bioinformatics

    Volume 79, Issue S10, 2011, Pages: 59–73, Lisa Kinch, Shuo Yong Shi, Qian Cong, Hua Cheng, Yuxing Liao and Nick V. Grishin

    Version of Record online : 14 OCT 2011, DOI: 10.1002/prot.23181

  3. Selective refinement and selection of near-native models in protein structure prediction

    Proteins: Structure, Function, and Bioinformatics

    Volume 83, Issue 10, October 2015, Pages: 1823–1835, Jiong Zhang, Bogdan Barz, Jingfen Zhang, Dong Xu and Ioan Kosztin

    Version of Record online : 12 AUG 2015, DOI: 10.1002/prot.24866

  4. Assessment of template based protein structure predictions in CASP9

    Proteins: Structure, Function, and Bioinformatics

    Volume 79, Issue S10, 2011, Pages: 37–58, Valerio Mariani, Florian Kiefer, Tobias Schmidt, Juergen Haas and Torsten Schwede

    Version of Record online : 15 OCT 2011, DOI: 10.1002/prot.23177

  5. Template-based protein structure modeling using TASSERVMT

    Proteins: Structure, Function, and Bioinformatics

    Volume 80, Issue 2, February 2012, Pages: 352–361, Hongyi Zhou and Jeffrey Skolnick

    Version of Record online : 22 NOV 2011, DOI: 10.1002/prot.23183

  6. Refinement of unreliable local regions in template-based protein models

    Proteins: Structure, Function, and Bioinformatics

    Volume 80, Issue 8, August 2012, Pages: 1974–1986, Hahnbeom Park and Chaok Seok

    Version of Record online : 23 MAY 2012, DOI: 10.1002/prot.24086

  7. MUFOLD-WQA: A new selective consensus method for quality assessment in protein structure prediction

    Proteins: Structure, Function, and Bioinformatics

    Volume 79, Issue S10, 2011, Pages: 185–195, Qingguo Wang, Kittinun Vantasin, Dong Xu and Yi Shang

    Version of Record online : 14 OCT 2011, DOI: 10.1002/prot.23185

  8. Evaluation of model quality predictions in CASP9

    Proteins: Structure, Function, and Bioinformatics

    Volume 79, Issue S10, 2011, Pages: 91–106, Andriy Kryshtafovych, Krzysztof Fidelis and Anna Tramontano

    Version of Record online : 14 OCT 2011, DOI: 10.1002/prot.23180

  9. CASP9 target classification

    Proteins: Structure, Function, and Bioinformatics

    Volume 79, Issue S10, 2011, Pages: 21–36, Lisa N. Kinch, Shuoyong Shi, Hua Cheng, Qian Cong, Jimin Pei, Valerio Mariani, Torsten Schwede and Nick V. Grishin

    Version of Record online : 14 OCT 2011, DOI: 10.1002/prot.23190

  10. Refinement of protein structure homology models via long, all-atom molecular dynamics simulations

    Proteins: Structure, Function, and Bioinformatics

    Volume 80, Issue 8, August 2012, Pages: 2071–2079, Alpan Raval, Stefano Piana, Michael P. Eastwood, Ron O. Dror and David E. Shaw

    Version of Record online : 14 MAY 2012, DOI: 10.1002/prot.24098

  11. Assessment of protein structure refinement in CASP9

    Proteins: Structure, Function, and Bioinformatics

    Volume 79, Issue S10, 2011, Pages: 74–90, Justin L. MacCallum, Alberto Pérez, Michael J. Schnieders, Lan Hua, Matthew P. Jacobson and Ken A. Dill

    Version of Record online : 30 AUG 2011, DOI: 10.1002/prot.23131

  12. CASP9 results compared to those of previous casp experiments

    Proteins: Structure, Function, and Bioinformatics

    Volume 79, Issue S10, 2011, Pages: 196–207, Andriy Kryshtafovych, Krzysztof Fidelis and John Moult

    Version of Record online : 14 OCT 2011, DOI: 10.1002/prot.23182

  13. You have free access to this content
    Assessment of template-free modeling in CASP10 and ROLL

    Proteins: Structure, Function, and Bioinformatics

    Volume 82, Issue S2, February 2014, Pages: 57–83, Chin-Hsien Tai, Hongjun Bai, Todd J. Taylor and Byungkook Lee

    Version of Record online : 17 DEC 2013, DOI: 10.1002/prot.24470

  14. You have free access to this content
    Assessment of template-based protein structure predictions in CASP10

    Proteins: Structure, Function, and Bioinformatics

    Volume 82, Issue S2, February 2014, Pages: 43–56, Yuanpeng J. Huang, Binchen Mao, James M. Aramini and Gaetano T. Montelione

    Version of Record online : 25 JAN 2014, DOI: 10.1002/prot.24488

  15. You have free access to this content
    An iterative self-refining and self-evaluating approach for protein model quality estimation

    Protein Science

    Volume 21, Issue 1, January 2012, Pages: 142–151, Zheng Wang and Jianlin Cheng

    Version of Record online : 23 NOV 2011, DOI: 10.1002/pro.764

  16. A multilayer evaluation approach for protein structure prediction and model quality assessment

    Proteins: Structure, Function, and Bioinformatics

    Volume 79, Issue S10, 2011, Pages: 172–184, Jingfen Zhang, Qingguo Wang, Kittinun Vantasin, Jiong Zhang, Zhiquan He, Ioan Kosztin, Yi Shang and Dong Xu

    Version of Record online : 14 OCT 2011, DOI: 10.1002/prot.23184

  17. A multiple-template approach to protein threading

    Proteins: Structure, Function, and Bioinformatics

    Volume 79, Issue 6, June 2011, Pages: 1930–1939, Jian Peng and Jinbo Xu

    Version of Record online : 4 APR 2011, DOI: 10.1002/prot.23016

  18. ASTRO-FOLD 2.0: An enhanced framework for protein structure prediction

    AIChE Journal

    Volume 58, Issue 5, May 2012, Pages: 1619–1637, A. Subramani, Y. Wei and C. A. Floudas

    Version of Record online : 31 MAY 2011, DOI: 10.1002/aic.12669

  19. You have free access to this content
    Modeling large regions in proteins: Applications to loops, termini, and folding

    Protein Science

    Volume 21, Issue 1, January 2012, Pages: 107–121, Aashish N. Adhikari, Jian Peng, Michael Wilde, Jinbo Xu, Karl F. Freed and Tobin R. Sosnick

    Version of Record online : 5 DEC 2011, DOI: 10.1002/pro.767

  20. You have free access to this content
    Assessment of template-based modeling of protein structure in CASP11

    Proteins: Structure, Function, and Bioinformatics

    Vivek Modi, Qifang Xu, Sam Adhikari and Roland L. Dunbrack Jr.

    Version of Record online : 15 JUN 2016, DOI: 10.1002/prot.25049