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There are 64556 results for: content related to: How maltose influences structural changes to bind to maltose-binding protein: Results from umbrella sampling simulation

  1. Kinetics, in silico docking, molecular dynamics, and MM-GBSA binding studies on prototype indirubins, KT5720, and staurosporine as phosphorylase kinase ATP-binding site inhibitors: The role of water molecules examined

    Proteins: Structure, Function, and Bioinformatics

    Volume 79, Issue 3, March 2011, Pages: 703–719, Joseph M. Hayes, Vicky T. Skamnaki, Georgios Archontis, Christos Lamprakis, Josephine Sarrou, Nicolas Bischler, Alexios-Leandros Skaltsounis, Spyros E. Zographos and Nikos G. Oikonomakos

    Article first published online : 3 DEC 2010, DOI: 10.1002/prot.22890

  2. Validating the vitality strategy for fighting drug resistance

    Proteins: Structure, Function, and Bioinformatics

    Volume 80, Issue 4, April 2012, Pages: 1110–1122, Nidhi Singh, Maria P. Frushicheva and Arieh Warshel

    Article first published online : 31 JAN 2012, DOI: 10.1002/prot.24012

  3. Conformational selection and induced changes along the catalytic cycle of Escherichia coli dihydrofolate reductase

    Proteins: Structure, Function, and Bioinformatics

    Volume 80, Issue 10, October 2012, Pages: 2369–2383, Thomas R. Weikl and David D. Boehr

    Article first published online : 3 JUL 2012, DOI: 10.1002/prot.24123

  4. Temperature and pressure denaturation of chignolin: Folding and unfolding simulation by multibaric-multithermal molecular dynamics method

    Proteins: Structure, Function, and Bioinformatics

    Volume 80, Issue 10, October 2012, Pages: 2397–2416, Hisashi Okumura

    Article first published online : 10 JUL 2012, DOI: 10.1002/prot.24125

  5. A dynamic model for processive transcription elongation and backtracking long pauses by multisubunit RNA polymerases

    Proteins: Structure, Function, and Bioinformatics

    Volume 80, Issue 8, August 2012, Pages: 2020–2034, Ping Xie

    Article first published online : 17 MAY 2012, DOI: 10.1002/prot.24090

  6. Sequential four-state folding/unfolding of goat α-lactalbumin and its N-terminal variants

    Proteins: Structure, Function, and Bioinformatics

    Volume 80, Issue 9, August 2012, Pages: 2191–2206, Katsuaki Tomoyori, Takashi Nakamura, Koki Makabe, Kosuke Maki, Kimiko Saeki and Kunihiro Kuwajima

    Article first published online : 18 JUN 2012, DOI: 10.1002/prot.24109

  7. Modeling protein density of states: Additive hydrophobic effects are insufficient for calorimetric two-state cooperativity

    Proteins: Structure, Function, and Bioinformatics

    Volume 40, Issue 4, 1 September 2000, Pages: 543–571, Hue Sun Chan

    Article first published online : 28 JUN 2000, DOI: 10.1002/1097-0134(20000901)40:4<543::AID-PROT20>3.0.CO;2-O

  8. Detection of multiscale pockets on protein surfaces using mathematical morphology

    Proteins: Structure, Function, and Bioinformatics

    Volume 78, Issue 5, April 2010, Pages: 1195–1211, Takeshi Kawabata

    Article first published online : 16 OCT 2009, DOI: 10.1002/prot.22639

  9. PRL-dock: Protein-ligand docking based on hydrogen bond matching and probabilistic relaxation labeling

    Proteins: Structure, Function, and Bioinformatics

    Volume 80, Issue 9, August 2012, Pages: 2137–2153, Meng-Yun Wu, Dao-Qing Dai and Hong Yan

    Article first published online : 4 JUN 2012, DOI: 10.1002/prot.24104

  10. Sequence determinants of protein folding rates: Positive correlation between contact energy and contact range indicates selection for fast folding

    Proteins: Structure, Function, and Bioinformatics

    Volume 80, Issue 9, August 2012, Pages: 2287–2304, Ugo Bastolla, Pierpaolo Bruscolini and José Luis Velasco

    Article first published online : 18 JUN 2012, DOI: 10.1002/prot.24118

  11. Quasi-harmonic fluctuations of two bound peptides

    Proteins: Structure, Function, and Bioinformatics

    Volume 80, Issue 12, December 2012, Pages: 2769–2779, Mert Gur and Burak Erman

    Article first published online : 15 SEP 2012, DOI: 10.1002/prot.24160

  12. Swfoldrate: Predicting protein folding rates from amino acid sequence with sliding window method

    Proteins: Structure, Function, and Bioinformatics

    Volume 81, Issue 1, January 2013, Pages: 140–148, Xiang Cheng, Xuan Xiao, Zhi-cheng Wu, Pu Wang and Wei-zhong Lin

    Article first published online : 26 SEP 2012, DOI: 10.1002/prot.24171

  13. Signatures of the ATP-binding pocket as a basis for structural classification of the serine/threonine protein kinases of gram-positive bacteria

    Proteins: Structure, Function, and Bioinformatics

    Volume 80, Issue 5, May 2012, Pages: 1363–1376, Natalia V. Zakharevich, Dmitry I. Osolodkin, Irena I. Artamonova, Vladimir A. Palyulin, Nikolay S. Zefirov and Valery N. Danilenko

    Article first published online : 13 FEB 2012, DOI: 10.1002/prot.24032

  14. Ab initio protein structure assembly using continuous structure fragments and optimized knowledge-based force field

    Proteins: Structure, Function, and Bioinformatics

    Volume 80, Issue 7, July 2012, Pages: 1715–1735, Dong Xu and Yang Zhang

    Article first published online : 13 APR 2012, DOI: 10.1002/prot.24065

  15. Three enhancements to the inference of statistical protein-DNA potentials

    Proteins: Structure, Function, and Bioinformatics

    Volume 81, Issue 3, March 2013, Pages: 426–442, Mohammed AlQuraishi and Harley H. McAdams

    Article first published online : 12 NOV 2012, DOI: 10.1002/prot.24201

  16. Novel approach for α-helical topology prediction in globular proteins: Generation of interhelical restraints

    Proteins: Structure, Function, and Bioinformatics

    Volume 65, Issue 4, 1 December 2006, Pages: 930–952, S. R. McAllister, B. E. Mickus, J. L. Klepeis and C. A. Floudas

    Article first published online : 6 OCT 2006, DOI: 10.1002/prot.21095

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    Multiscale simulations of protein landscapes: Using coarse-grained models as reference potentials to full explicit models

    Proteins: Structure, Function, and Bioinformatics

    Volume 78, Issue 5, April 2010, Pages: 1212–1227, Benjamin M. Messer, Maite Roca, Zhen T. Chu, Spyridon Vicatos, Alexandra Vardi Kilshtain and Arieh Warshel

    Article first published online : 16 OCT 2009, DOI: 10.1002/prot.22640

  18. The geometry of α-sheet: Implications for its possible function as amyloid precursor in proteins

    Proteins: Structure, Function, and Bioinformatics

    Volume 71, Issue 1, April 2008, Pages: 415–425, Steven Hayward and E. James Milner-White

    Article first published online : 23 OCT 2007, DOI: 10.1002/prot.21717

  19. Interactions of macromolecules with salt ions: An electrostatic theory for the Hofmeister effect

    Proteins: Structure, Function, and Bioinformatics

    Volume 61, Issue 1, 1 October 2005, Pages: 69–78, Huan-Xiang Zhou

    Article first published online : 25 JUL 2005, DOI: 10.1002/prot.20500

  20. Helix stability of oligoglycine, oligoalanine, and oligo-β-alanine dodecamers reflected by hydrogen-bond persistence

    Proteins: Structure, Function, and Bioinformatics

    Chengyu Liu, Jay W. Ponder and Garland R. Marshall

    Article first published online : 20 SEP 2014, DOI: 10.1002/prot.24665