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There are 8676 results for: content related to: Structure refinement of protein model decoys requires accurate side-chain placement

  1. Application of replica exchange umbrella sampling to protein structure refinement of nontemplate models

    Journal of Computational Chemistry

    Volume 34, Issue 20, 30 July 2013, Pages: 1785–1793, Mark A. Olson and Michael S. Lee

    Article first published online : 23 MAY 2013, DOI: 10.1002/jcc.23325

  2. SIDEpro: A novel machine learning approach for the fast and accurate prediction of side-chain conformations

    Proteins: Structure, Function, and Bioinformatics

    Volume 80, Issue 1, January 2012, Pages: 142–153, Ken Nagata, Arlo Randall and Pierre Baldi

    Article first published online : 9 NOV 2011, DOI: 10.1002/prot.23170

  3. You have free access to this content
    Improved prediction of protein side-chain conformations with SCWRL4

    Proteins: Structure, Function, and Bioinformatics

    Volume 77, Issue 4, December 2009, Pages: 778–795, Georgii G. Krivov, Maxim V. Shapovalov and Roland L. Dunbrack Jr.

    Article first published online : 29 MAY 2009, DOI: 10.1002/prot.22488

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    New Insights Into the Brain, Braincase, and Ear Region of Tyrannosaurs (Dinosauria, Theropoda), with Implications for Sensory Organization and Behavior

    The Anatomical Record

    Volume 292, Issue 9, September 2009, Pages: 1266–1296, Lawrence M. Witmer and Ryan C. Ridgely

    Article first published online : 26 AUG 2009, DOI: 10.1002/ar.20983

  5. Protein side-chain modeling with a protein-dependent optimized rotamer library

    Proteins: Structure, Function, and Bioinformatics

    Volume 82, Issue 9, September 2014, Pages: 2000–2017, Patricia Francis-Lyon and Patrice Koehl

    Article first published online : 16 APR 2014, DOI: 10.1002/prot.24555

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    Dental morphology and variation in theropod dinosaurs: Implications for the taxonomic identification of isolated teeth

    The Anatomical Record Part A: Discoveries in Molecular, Cellular, and Evolutionary Biology

    Volume 285A, Issue 2, August 2005, Pages: 699–736, Joshua B. Smith, David R. Vann and Peter Dodson

    Article first published online : 28 JUN 2005, DOI: 10.1002/ar.a.20206

  7. Using the terrestrial residue exposure (T-REX) model to assess threatened and endangered bird exposure to and risk from pesticides

    Integrated Environmental Assessment and Management

    Volume 9, Issue 3, July 2013, Pages: 480–495, Joseph P Sullivan and Joseph D Wisk

    Article first published online : 18 APR 2013, DOI: 10.1002/ieam.1390

  8. Detecting local residue environment similarity for recognizing near-native structure models

    Proteins: Structure, Function, and Bioinformatics

    Volume 82, Issue 12, December 2014, Pages: 3255–3272, Hyungrae Kim and Daisuke Kihara

    Article first published online : 30 OCT 2014, DOI: 10.1002/prot.24658

  9. What is the best reference state for designing statistical atomic potentials in protein structure prediction?

    Proteins: Structure, Function, and Bioinformatics

    Volume 80, Issue 9, August 2012, Pages: 2311–2322, Haiyou Deng, Ya Jia, Yanyu Wei and Yang Zhang

    Article first published online : 18 JUN 2012, DOI: 10.1002/prot.24121

  10. Improvements to elementary children's epistemic understanding from sustained argumentation

    Science Education

    Volume 96, Issue 3, May 2012, Pages: 488–526, Suna Ryu and William A. Sandoval

    Article first published online : 12 APR 2012, DOI: 10.1002/sce.21006

  11. Tasser-Based Protein Structure Prediction

    Introduction to Protein Structure Prediction: Methods and Algorithms

    Shashi Bhushan Pandit, Hongyi Zhou, Jeffrey Skolnick, Pages: 219–242, 2010

    Published Online : 7 SEP 2010, DOI: 10.1002/9780470882207.ch10

  12. Composite Approaches to Protein Tertiary Structure Prediction: A Case-Study by I-Tasser

    Introduction to Protein Structure Prediction: Methods and Algorithms

    Ambrish Roy, Sitao Wu, Yang Zhang, Pages: 243–263, 2010

    Published Online : 7 SEP 2010, DOI: 10.1002/9780470882207.ch11

  13. Diversity of late Maastrichtian Tyrannosauridae (Dinosauria: Theropoda) from western North America

    Zoological Journal of the Linnean Society

    Volume 142, Issue 4, December 2004, Pages: 479–523, THOMAS D. CARR and THOMAS E. WILLIAMSON

    Article first published online : 2 DEC 2004, DOI: 10.1111/j.1096-3642.2004.00130.x

  14. Viperin is an iron-sulfur protein that inhibits genome synthesis of tick-borne encephalitis virus via radical SAM domain activity

    Cellular Microbiology

    Volume 16, Issue 6, June 2014, Pages: 834–848, Arunkumar S. Upadhyay, Kirstin Vonderstein, Andreas Pichlmair, Oliver Stehling, Keiryn L. Bennett, Gerhard Dobler, Ju-Tao Guo, Giulio Superti-Furga, Roland Lill, Anna K. Överby and Friedemann Weber

    Article first published online : 3 DEC 2013, DOI: 10.1111/cmi.12241

  15. Comparison between self-guided Langevin dynamics and molecular dynamics simulations for structure refinement of protein loop conformations

    Journal of Computational Chemistry

    Volume 32, Issue 14, 15 November 2011, Pages: 3014–3022, Mark A. Olson, Sidhartha Chaudhury and Michael S. Lee

    Article first published online : 25 JUL 2011, DOI: 10.1002/jcc.21883

  16. Ab initio protein structure assembly using continuous structure fragments and optimized knowledge-based force field

    Proteins: Structure, Function, and Bioinformatics

    Volume 80, Issue 7, July 2012, Pages: 1715–1735, Dong Xu and Yang Zhang

    Article first published online : 13 APR 2012, DOI: 10.1002/prot.24065

  17. Biomechanical modeling and sensitivity analysis of bipedal running ability. II. Extinct taxa

    Journal of Morphology

    Volume 262, Issue 1, October 2004, Pages: 441–461, John R. Hutchinson

    Article first published online : 16 AUG 2004, DOI: 10.1002/jmor.10240

  18. “Muy Macha”: Gendered Performances and the Avoidance of Social Injury

    Homegirls: Language and Cultural Practice Among Latina Youth Gangs

    Norma Mendoza-Denton, Pages: 148–175, 2008

    Published Online : 17 MAR 2008, DOI: 10.1002/9780470693728.ch5

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    Riluzole activates TRPC5 channels independently of PLC activity

    British Journal of Pharmacology

    Volume 171, Issue 1, January 2014, Pages: 158–170, Julia M Richter, Michael Schaefer and Kerstin Hill

    Article first published online : 10 DEC 2013, DOI: 10.1111/bph.12436

  20. Improving ranking of models for protein complexes with side chain modeling and atomic potentials

    Proteins: Structure, Function, and Bioinformatics

    Volume 81, Issue 4, April 2013, Pages: 592–606, Shruthi Viswanath, D. V. S. Ravikant and Ron Elber

    Article first published online : 24 DEC 2012, DOI: 10.1002/prot.24214