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There are 10516 results for: content related to: CyClus: A fast, comprehensive cylindrical interface approximation clustering/reranking method for rigid-body protein–protein docking decoys

  1. A large decoy set of protein–protein complexes produced by flexible docking

    Journal of Computational Chemistry

    Volume 32, Issue 1, 15 January 2011, Pages: 106–120, Guillaume Launay and Thomas Simonson

    Version of Record online : 17 NOV 2010, DOI: 10.1002/jcc.21604

  2. LABORATORY EXPERIMENTS ON GREGARIOUS BEHAVIOUR IN OVIPOSITING FEMALES OF THE DESERT LOCUST, (SCHISTOCERCA GREGARIA (FORSK.))

    Entomologia Experimentalis et Applicata

    Volume 6, Issue 4, December 1963, Pages: 279–303, MAUD J. NORRIS and Mrs. O. W. RICHARDS

    Version of Record online : 5 APR 2011, DOI: 10.1111/j.1570-7458.1963.tb00628.x

  3. Comparison of two optimization methods to derive energy parameters for protein folding: Perceptron and Z score

    Proteins: Structure, Function, and Bioinformatics

    Volume 41, Issue 2, 1 November 2000, Pages: 192–201, Michele Vendruscolo, Leonid A. Mirny, Eugene I. Shakhnovich and Eytan Domany

    Version of Record online : 17 AUG 2000, DOI: 10.1002/1097-0134(20001101)41:2<192::AID-PROT40>3.0.CO;2-3

  4. Coarse- and fine-grained models for proteins: Evaluation by decoy discrimination

    Proteins: Structure, Function, and Bioinformatics

    Volume 81, Issue 5, May 2013, Pages: 754–773, Chris Kauffman and George Karypis

    Version of Record online : 27 FEB 2013, DOI: 10.1002/prot.24222

  5. Structure refinement of protein model decoys requires accurate side-chain placement

    Proteins: Structure, Function, and Bioinformatics

    Volume 81, Issue 3, March 2013, Pages: 469–478, Mark A. Olson and Michael S. Lee

    Version of Record online : 12 NOV 2012, DOI: 10.1002/prot.24204

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    On the analysis of protein–protein interactions via knowledge-based potentials for the prediction of protein–protein docking

    Protein Science

    Volume 20, Issue 3, March 2011, Pages: 529–541, Elisenda Feliu, Patrick Aloy and Baldo Oliva

    Version of Record online : 24 FEB 2011, DOI: 10.1002/pro.585

  7. A discriminative Ramachandran potential of mean force aimed at minimizing secondary structure bias

    Journal of Computational Chemistry

    Volume 33, Issue 7, 15 March 2012, Pages: 791–799, Sampath Koppole and Michael Schaefer

    Version of Record online : 6 JAN 2012, DOI: 10.1002/jcc.22908

  8. Testing alternative explanations of phantom decoy effects

    Journal of Behavioral Decision Making

    Volume 20, Issue 3, July 2007, Pages: 323–341, Jonathan C. Pettibone and Douglas H. Wedell

    Version of Record online : 2 JAN 2007, DOI: 10.1002/bdm.557

  9. Attracting endangered species to ‘safe’ habitats: responses of fairy terns to decoys

    Animal Conservation

    Volume 4, Issue 4, November 2001, Pages: 301–305, D. S. Jeffries and D. H. Brunton

    Version of Record online : 28 FEB 2006, DOI: 10.1017/S1367943001001354

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    Cues used by the black fly, Simulium annulus, for attraction to the common loon (Gavia immer)

    Journal of Vector Ecology

    Volume 37, Issue 2, December 2012, Pages: 359–364, Meggin L. Weinandt, Michael Meyer, Mac Strand and Alec R. Lindsay

    Version of Record online : 26 NOV 2012, DOI: 10.1111/j.1948-7134.2012.00239.x

  11. Protein structure refinement by optimization

    Proteins: Structure, Function, and Bioinformatics

    Volume 83, Issue 9, September 2015, Pages: 1616–1624, Martin Carlsen and Peter Røgen

    Version of Record online : 21 JUL 2015, DOI: 10.1002/prot.24846

  12. Sampling and scoring: A marriage made in heaven

    Proteins: Structure, Function, and Bioinformatics

    Volume 81, Issue 11, November 2013, Pages: 1874–1884, Sandor Vajda, David R. Hall and Dima Kozakov

    Version of Record online : 18 AUG 2013, DOI: 10.1002/prot.24343

  13. Optimized distance-dependent atom-pair-based potential DOOP for protein structure prediction

    Proteins: Structure, Function, and Bioinformatics

    Volume 83, Issue 5, May 2015, Pages: 881–890, Myong-Ho Chae, Florian Krull and Ernst-Walter Knapp

    Version of Record online : 25 MAR 2015, DOI: 10.1002/prot.24782

  14. Multi-LZerD: Multiple protein docking for asymmetric complexes

    Proteins: Structure, Function, and Bioinformatics

    Volume 80, Issue 7, July 2012, Pages: 1818–1833, Juan Esquivel-Rodríguez, Yifeng David Yang and Daisuke Kihara

    Version of Record online : 8 MAY 2012, DOI: 10.1002/prot.24079

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    Design of an optimal Chebyshev-expanded discrimination function for globular proteins

    Protein Science

    Volume 11, Issue 8, August 2002, Pages: 2010–2021, Boris Fain, Yu Xia and Michael Levitt

    Version of Record online : 13 APR 2009, DOI: 10.1110/ps.0200702

  16. Anaplerotische Sequenzen im mikrobiologischen Stoffwechsel

    Angewandte Chemie

    Volume 77, Issue 14, 21. Juli 1965, Pages: 601–609, Prof. Dr. H. L. Kornberg

    Version of Record online : 20 JAN 2006, DOI: 10.1002/ange.19650771402

  17. Detecting local residue environment similarity for recognizing near-native structure models

    Proteins: Structure, Function, and Bioinformatics

    Volume 82, Issue 12, December 2014, Pages: 3255–3272, Hyungrae Kim and Daisuke Kihara

    Version of Record online : 30 OCT 2014, DOI: 10.1002/prot.24658

  18. How noise in force fields can affect the structural refinement of protein models?

    Proteins: Structure, Function, and Bioinformatics

    Volume 80, Issue 2, February 2012, Pages: 335–341, Pawel Gniewek, Andrzej Kolinski, Robert L Jernigan and Andrzej Kloczkowski

    Version of Record online : 16 DEC 2011, DOI: 10.1002/prot.23240

  19. A model of local-minima distribution on conformational space and its application to protein structure prediction

    Proteins: Structure, Function, and Bioinformatics

    Volume 64, Issue 4, 1 September 2006, Pages: 985–991, Hongzhi Li

    Version of Record online : 12 JUL 2006, DOI: 10.1002/prot.21084

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    Application of MM/PBSA colony free energy to loop decoy discrimination: Toward correlation between energy and root mean square deviation

    Protein Science

    Volume 14, Issue 4, April 2005, Pages: 889–901, Federico Fogolari and Silvio C.E. Tosatto

    Version of Record online : 1 JAN 2009, DOI: 10.1110/ps.041004105