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There are 3883 results for: content related to: Probing the role of interfacial waters in protein–DNA recognition using a hybrid implicit/explicit solvation model

  1. Sequence and conformational preferences at termini of α-helices in membrane proteins: Role of the helix environment

    Proteins: Structure, Function, and Bioinformatics

    Volume 82, Issue 12, December 2014, Pages: 3420–3436, Ashish Shelar and Manju Bansal

    Article first published online : 10 OCT 2014, DOI: 10.1002/prot.24696

  2. Application of information theory to a three-body coarse-grained representation of proteins in the PDB: Insights into the structural and evolutionary roles of residues in protein structure

    Proteins: Structure, Function, and Bioinformatics

    Volume 82, Issue 12, December 2014, Pages: 3450–3465, Jared J. Thompson, Hamed Tabatabaei Ghomi and Markus A. Lill

    Article first published online : 21 OCT 2014, DOI: 10.1002/prot.24698

  3. Polyanion binding accelerates the formation of stable and low-toxic aggregates of ALS-linked SOD1 mutant A4V

    Proteins: Structure, Function, and Bioinformatics

    Volume 82, Issue 12, December 2014, Pages: 3356–3372, Dan Zhao, Shibing Zhang, Yan Meng, Dong Xiongwei, Dan Zhang, Yi Liang, Li Wang and Changlin Liu

    Article first published online : 1 OCT 2014, DOI: 10.1002/prot.24691

  4. Characterizing of functional human coding RNA editing from evolutionary, structural, and dynamic perspectives

    Proteins: Structure, Function, and Bioinformatics

    Volume 82, Issue 11, November 2014, Pages: 3117–3131, Oz Solomon, Lily Bazak, Erez Y. Levanon, Ninette Amariglio, Ron Unger, Gideon Rechavi and Eran Eyal

    Article first published online : 3 SEP 2014, DOI: 10.1002/prot.24672

  5. Discovery of multiple interacting partners of gankyrin, a proteasomal chaperone and an oncoprotein—Evidence for a common hot spot site at the interface and its functional relevance

    Proteins: Structure, Function, and Bioinformatics

    Volume 82, Issue 7, July 2014, Pages: 1283–1300, Padma P. Nanaware, Manoj P. Ramteke, Arun K. Somavarapu and Prasanna Venkatraman

    Article first published online : 15 JAN 2014, DOI: 10.1002/prot.24494

  6. Hot-spot analysis to dissect the functional protein–protein interface of a tRNA-modifying enzyme

    Proteins: Structure, Function, and Bioinformatics

    Volume 82, Issue 10, October 2014, Pages: 2713–2732, Stephan Jakobi, Tran Xuan Phong Nguyen, François Debaene, Alexander Metz, Sarah Sanglier-Cianférani, Klaus Reuter and Gerhard Klebe

    Article first published online : 14 JUL 2014, DOI: 10.1002/prot.24637

  7. Refinement by shifting secondary structure elements improves sequence alignments

    Proteins: Structure, Function, and Bioinformatics

    Jing Tong, Jimin Pei, Zbyszek Otwinowski and Nick V. Grishin

    Article first published online : 13 JAN 2015, DOI: 10.1002/prot.24746

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    Computational modeling of membrane proteins

    Proteins: Structure, Function, and Bioinformatics

    Volume 83, Issue 1, January 2015, Pages: 1–24, Julia Koehler Leman, Martin B. Ulmschneider and Jeffrey J. Gray

    Article first published online : 19 NOV 2014, DOI: 10.1002/prot.24703

  9. You have full text access to this OnlineOpen article
    Homology models of the HIV-1 attachment inhibitor BMS-626529 bound to gp120 suggest a unique mechanism of action

    Proteins: Structure, Function, and Bioinformatics

    Volume 83, Issue 2, February 2015, Pages: 331–350, David R. Langley, S. Roy Kimura, Prasanna Sivaprakasam, Nannan Zhou, Ira Dicker, Brian McAuliffe, Tao Wang, John F. Kadow, Nicholas A. Meanwell and Mark Krystal

    Article first published online : 23 DEC 2014, DOI: 10.1002/prot.24726

  10. Binding mode analysis of a major T3SS translocator protein PopB with its chaperone PcrH from Pseudomonas aeruginosa

    Proteins: Structure, Function, and Bioinformatics

    Volume 82, Issue 12, December 2014, Pages: 3273–3285, Anindyajit Banerjee, Supratim Dey, Abhijit Chakraborty, Aohona Datta, Abhishek Basu, Saikat Chakrabarti and Saumen Datta

    Article first published online : 21 OCT 2014, DOI: 10.1002/prot.24666

  11. A common structural scaffold in CTD phosphatases that supports distinct catalytic mechanisms

    Proteins: Structure, Function, and Bioinformatics

    Volume 82, Issue 1, January 2014, Pages: 103–118, Tirso Pons, Ida Paramonov, César Boullosa, Kristina Ibáñez, Ana M. Rojas and Alfonso Valencia

    Article first published online : 10 SEP 2013, DOI: 10.1002/prot.24376

  12. Disulfide bonds in amyloidogenesis diseases related proteins

    Proteins: Structure, Function, and Bioinformatics

    Volume 81, Issue 11, November 2013, Pages: 1862–1873, Yang Li, Juan Yan, Xin Zhang and Kun Huang

    Article first published online : 18 AUG 2013, DOI: 10.1002/prot.24338

  13. Exploring the multiscale signaling behavior of phototropin1 from Chlamydomonas reinhardtii using a full-residue space kinetic Monte Carlo molecular dynamics technique

    Proteins: Structure, Function, and Bioinformatics

    Volume 82, Issue 9, September 2014, Pages: 2018–2040, Emanuel Peter, Bernhard Dick, Ivan Stambolic and Stephan A. Baeurle

    Article first published online : 16 APR 2014, DOI: 10.1002/prot.24556

  14. Adaptive Smith–Waterman residue match seeding for protein structural alignment

    Proteins: Structure, Function, and Bioinformatics

    Volume 81, Issue 10, October 2013, Pages: 1823–1839, Christopher M. Topham, Mickaël Rouquier, Nathalie Tarrat and Isabelle André

    Article first published online : 18 AUG 2013, DOI: 10.1002/prot.24327

  15. Optimization of 3D Poisson–Nernst-Planck model for fast evaluation of diverse protein channels

    Proteins: Structure, Function, and Bioinformatics

    Volume 81, Issue 10, October 2013, Pages: 1802–1822, Witold Dyrka, Maciej M. Bartuzel and Malgorzata Kotulska

    Article first published online : 18 AUG 2013, DOI: 10.1002/prot.24326

  16. Burial of nonpolar surface area and thermodynamic stabilization of globins as a function of chain elongation

    Proteins: Structure, Function, and Bioinformatics

    Volume 82, Issue 10, October 2014, Pages: 2318–2331, Theodore S. Jennaro, Matthew R. Beaty, Neşe Kurt-Yilmaz, Benjamin L. Luskin and Silvia Cavagnero

    Article first published online : 12 MAY 2014, DOI: 10.1002/prot.24590

  17. QM/MM study of the C—C coupling reaction mechanism of CYP121, an essential Cytochrome p450 of Mycobacterium tuberculosis

    Proteins: Structure, Function, and Bioinformatics

    Volume 82, Issue 6, June 2014, Pages: 1004–1021, Victoria G. Dumas, Lucas A. Defelipe, Ariel A. Petruk, Adrian G. Turjanski and Marcelo A. Marti

    Article first published online : 6 DEC 2013, DOI: 10.1002/prot.24474

  18. Computationally-predicted CB1 cannabinoid receptor mutants show distinct patterns of salt-bridges that correlate with their level of constitutive activity reflected in G protein coupling levels, thermal stability, and ligand binding

    Proteins: Structure, Function, and Bioinformatics

    Volume 81, Issue 8, August 2013, Pages: 1304–1317, Kwang H. Ahn, Caitlin E. Scott, Ravinder Abrol, William A. Goddard III and Debra A. Kendall

    Article first published online : 14 JUN 2013, DOI: 10.1002/prot.24264

  19. Molecular dynamics study of HIV-1 RT-DNA-nevirapine complexes explains NNRTI inhibition and resistance by connection mutations

    Proteins: Structure, Function, and Bioinformatics

    Volume 82, Issue 5, May 2014, Pages: 815–829, R. S. K. Vijayan, Eddy Arnold and Kalyan Das

    Article first published online : 22 NOV 2013, DOI: 10.1002/prot.24460

  20. You have full text access to this OnlineOpen article
    Molecular mechanisms and design principles for promiscuous inhibitors to avoid drug resistance: Lessons learned from HIV-1 protease inhibition

    Proteins: Structure, Function, and Bioinformatics

    Volume 83, Issue 2, February 2015, Pages: 351–372, Yang Shen, Mala L. Radhakrishnan and Bruce Tidor

    Article first published online : 7 JAN 2015, DOI: 10.1002/prot.24730