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There are 11237 results for: content related to: A simple probabilistic model of multibody interactions in proteins

  1. Refining the treatment of membrane proteins by coarse-grained models

    Proteins: Structure, Function, and Bioinformatics

    Volume 84, Issue 1, January 2016, Pages: 92–117, Igor Vorobyov, Ilsoo Kim, Zhen T. Chu and Arieh Warshel

    Version of Record online : 9 DEC 2015, DOI: 10.1002/prot.24958

  2. BetaVoid: Molecular voids via beta-complexes and Voronoi diagrams

    Proteins: Structure, Function, and Bioinformatics

    Volume 82, Issue 9, September 2014, Pages: 1829–1849, Jae-Kwan Kim, Youngsong Cho, Roman A Laskowski, Seong Eon Ryu, Kokichi Sugihara and Deok-Soo Kim

    Version of Record online : 20 MAR 2014, DOI: 10.1002/prot.24537

  3. Adaptive Smith–Waterman residue match seeding for protein structural alignment

    Proteins: Structure, Function, and Bioinformatics

    Volume 81, Issue 10, October 2013, Pages: 1823–1839, Christopher M. Topham, Mickaël Rouquier, Nathalie Tarrat and Isabelle André

    Version of Record online : 18 AUG 2013, DOI: 10.1002/prot.24327

  4. Coupling between overall rotational diffusion and domain motions in proteins and its effect on dielectric spectra

    Proteins: Structure, Function, and Bioinformatics

    Volume 83, Issue 9, September 2015, Pages: 1571–1581, Yaroslav Ryabov

    Version of Record online : 6 AUG 2015, DOI: 10.1002/prot.24814

  5. Method for identification of rigid domains and hinge residues in proteins based on exhaustive enumeration

    Proteins: Structure, Function, and Bioinformatics

    Volume 83, Issue 6, June 2015, Pages: 1054–1067, Jaehyun Sim, Jun Sim, Eunsung Park and Julian Lee

    Version of Record online : 22 APR 2015, DOI: 10.1002/prot.24799

  6. Kinetics of protein fibrillation controlled by fibril elongation

    Proteins: Structure, Function, and Bioinformatics

    Volume 82, Issue 9, September 2014, Pages: 2229–2239, Dimo Kashchiev

    Version of Record online : 2 MAY 2014, DOI: 10.1002/prot.24586

  7. Optimization of 3D Poisson–Nernst-Planck model for fast evaluation of diverse protein channels

    Proteins: Structure, Function, and Bioinformatics

    Volume 81, Issue 10, October 2013, Pages: 1802–1822, Witold Dyrka, Maciej M. Bartuzel and Malgorzata Kotulska

    Version of Record online : 18 AUG 2013, DOI: 10.1002/prot.24326

  8. An effective Coarse-grained model for biological simulations: Recent refinements and validations

    Proteins: Structure, Function, and Bioinformatics

    Volume 82, Issue 7, July 2014, Pages: 1168–1185, Spyridon Vicatos, Anna Rychkova, Shayantani Mukherjee and Arieh Warshel

    Version of Record online : 6 DEC 2013, DOI: 10.1002/prot.24482

  9. Protein side-chain modeling with a protein-dependent optimized rotamer library

    Proteins: Structure, Function, and Bioinformatics

    Volume 82, Issue 9, September 2014, Pages: 2000–2017, Patricia Francis-Lyon and Patrice Koehl

    Version of Record online : 16 APR 2014, DOI: 10.1002/prot.24555

  10. You have full text access to this OnlineOpen article
    Ligand binding and dynamics of the monomeric epidermal growth factor receptor ectodomain

    Proteins: Structure, Function, and Bioinformatics

    Volume 81, Issue 11, November 2013, Pages: 1931–1943, Hannes H. Loeffler and Martyn D. Winn

    Version of Record online : 18 AUG 2013, DOI: 10.1002/prot.24339

  11. Equilibrium transitions between side-chain conformations in leucine and isoleucine

    Proteins: Structure, Function, and Bioinformatics

    Volume 83, Issue 8, August 2015, Pages: 1488–1499, Diego Caballero, W. Wendell Smith, Corey S. O'Hern and Lynne Regan

    Version of Record online : 19 JUL 2015, DOI: 10.1002/prot.24837

  12. Mapping the intramolecular signal transduction of G-protein coupled receptors

    Proteins: Structure, Function, and Bioinformatics

    Volume 82, Issue 5, May 2014, Pages: 727–743, Yoonji Lee, Sun Choi and Changbong Hyeon

    Version of Record online : 22 NOV 2013, DOI: 10.1002/prot.24451

  13. pKa predictions for proteins, RNAs, and DNAs with the Gaussian dielectric function using DelPhi pKa

    Proteins: Structure, Function, and Bioinformatics

    Volume 83, Issue 12, December 2015, Pages: 2186–2197, Lin Wang, Lin Li and Emil Alexov

    Version of Record online : 16 OCT 2015, DOI: 10.1002/prot.24935

  14. Bridging between normal mode analysis and elastic network models

    Proteins: Structure, Function, and Bioinformatics

    Volume 82, Issue 9, September 2014, Pages: 2157–2168, Hyuntae Na and Guang Song

    Version of Record online : 21 APR 2014, DOI: 10.1002/prot.24571

  15. Thermodynamics of Aβ16–21 dissociation from a fibril: Enthalpy, entropy, and volumetric properties

    Proteins: Structure, Function, and Bioinformatics

    Volume 83, Issue 11, November 2015, Pages: 1963–1972, Srinivasa Rao Jampani, Farbod Mahmoudinobar, Zhaoqian Su and Cristiano L. Dias

    Version of Record online : 5 OCT 2015, DOI: 10.1002/prot.24875

  16. Geometrical comparison of two protein structures using Wigner-D functions

    Proteins: Structure, Function, and Bioinformatics

    Volume 82, Issue 10, October 2014, Pages: 2756–2769, S. M. Saberi Fathi, Diana T. White and Jack A. Tuszynski

    Version of Record online : 17 JUL 2014, DOI: 10.1002/prot.24640

  17. Discerning intersecting fusion-activation pathways in the Nipah virus using machine learning

    Proteins: Structure, Function, and Bioinformatics

    Volume 82, Issue 12, December 2014, Pages: 3241–3254, Sameer Varma, Mohsen Botlani and Ralph E. Leighty

    Version of Record online : 9 OCT 2014, DOI: 10.1002/prot.24541

  18. Identification of putative unfolding intermediates of the mutant His-107-tyr of human carbonic anhydrase II in a multidimensional property space

    Proteins: Structure, Function, and Bioinformatics

    Volume 84, Issue 6, June 2016, Pages: 726–743, Puspita Halder and Srabani Taraphder

    Version of Record online : 15 FEB 2016, DOI: 10.1002/prot.24980

  19. Methyltransferases do not work by compression, cratic, or desolvation effects, but by electrostatic preorganization

    Proteins: Structure, Function, and Bioinformatics

    Volume 83, Issue 2, February 2015, Pages: 318–330, Jeronimo Lameira, Ram Prasad Bora, Zhen T. Chu and Arieh Warshel

    Version of Record online : 7 JAN 2015, DOI: 10.1002/prot.24717

  20. Molecular dynamics of the structural changes of helical peptides induced by pressure

    Proteins: Structure, Function, and Bioinformatics

    Volume 82, Issue 11, November 2014, Pages: 2970–2981, Yoshiharu Mori and Hisashi Okumura

    Version of Record online : 11 AUG 2014, DOI: 10.1002/prot.24654