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There are 5092 results for: content related to: A simple probabilistic model of multibody interactions in proteins

  1. You have full text access to this OnlineOpen article
    Population shift of binding pocket size and dynamic correlation analysis shed new light on the anticooperative mechanism of PII protein

    Proteins: Structure, Function, and Bioinformatics

    Volume 82, Issue 6, June 2014, Pages: 1048–1059, Cheng-Wei Ma, Jan Lüddecke, Karl Forchhammer and An-Ping Zeng

    Article first published online : 23 NOV 2013, DOI: 10.1002/prot.24477

  2. Multivariate sequence analysis reveals additional function impacting residues in the SDR superfamily

    Proteins: Structure, Function, and Bioinformatics

    Volume 82, Issue 10, October 2014, Pages: 2842–2856, Pratibha Tiwari, Noopur Singh, Aparna Dixit and Devapriya Choudhury

    Article first published online : 19 AUG 2014, DOI: 10.1002/prot.24647

  3. Methyltransferases do not work by compression, cratic, or desolvation effects, but by electrostatic preorganization

    Proteins: Structure, Function, and Bioinformatics

    Volume 83, Issue 2, February 2015, Pages: 318–330, Jeronimo Lameira, Ram Prasad Bora, Zhen T. Chu and Arieh Warshel

    Article first published online : 7 JAN 2015, DOI: 10.1002/prot.24717

  4. Molecular dynamics simulations of transitions for ECD epidermal growth factor receptors show key differences between human and drosophila forms of the receptors

    Proteins: Structure, Function, and Bioinformatics

    Volume 81, Issue 7, July 2013, Pages: 1113–1126, Juan R. Perilla, Daniel J. Leahy and Thomas B. Woolf

    Article first published online : 10 APR 2013, DOI: 10.1002/prot.24257

  5. Molecular dynamics of the structural changes of helical peptides induced by pressure

    Proteins: Structure, Function, and Bioinformatics

    Volume 82, Issue 11, November 2014, Pages: 2970–2981, Yoshiharu Mori and Hisashi Okumura

    Article first published online : 11 AUG 2014, DOI: 10.1002/prot.24654

  6. Refinement by shifting secondary structure elements improves sequence alignments

    Proteins: Structure, Function, and Bioinformatics

    Volume 83, Issue 3, March 2015, Pages: 411–427, Jing Tong, Jimin Pei, Zbyszek Otwinowski and Nick V. Grishin

    Article first published online : 13 JAN 2015, DOI: 10.1002/prot.24746

  7. You have full text access to this OnlineOpen article
    Evaluation of predictions in the CASP10 model refinement category

    Proteins: Structure, Function, and Bioinformatics

    Volume 82, Issue S2, February 2014, Pages: 98–111, Timothy Nugent, Domenico Cozzetto and David T. Jones

    Article first published online : 3 JAN 2014, DOI: 10.1002/prot.24377

  8. Optimization of 3D Poisson–Nernst-Planck model for fast evaluation of diverse protein channels

    Proteins: Structure, Function, and Bioinformatics

    Volume 81, Issue 10, October 2013, Pages: 1802–1822, Witold Dyrka, Maciej M. Bartuzel and Malgorzata Kotulska

    Article first published online : 18 AUG 2013, DOI: 10.1002/prot.24326

  9. Discerning intersecting fusion-activation pathways in the Nipah virus using machine learning

    Proteins: Structure, Function, and Bioinformatics

    Volume 82, Issue 12, December 2014, Pages: 3241–3254, Sameer Varma, Mohsen Botlani and Ralph E. Leighty

    Article first published online : 9 OCT 2014, DOI: 10.1002/prot.24541

  10. Mapping the intramolecular signal transduction of G-protein coupled receptors

    Proteins: Structure, Function, and Bioinformatics

    Volume 82, Issue 5, May 2014, Pages: 727–743, Yoonji Lee, Sun Choi and Changbong Hyeon

    Article first published online : 22 NOV 2013, DOI: 10.1002/prot.24451

  11. A detailed representation of electrostatic energy in prediction of sequence and pH dependence of protein stability

    Proteins: Structure, Function, and Bioinformatics

    Volume 82, Issue 10, October 2014, Pages: 2497–2511, Michael J. Dudek

    Article first published online : 9 JUN 2014, DOI: 10.1002/prot.24613

  12. Bayesian model aggregation for ensemble-based estimates of protein pKa values

    Proteins: Structure, Function, and Bioinformatics

    Volume 82, Issue 3, March 2014, Pages: 354–363, Luke J. Gosink, Emilie A. Hogan, Trenton C. Pulsipher and Nathan A. Baker

    Article first published online : 17 OCT 2013, DOI: 10.1002/prot.24390

  13. You have full text access to this OnlineOpen article
    Ligand binding and dynamics of the monomeric epidermal growth factor receptor ectodomain

    Proteins: Structure, Function, and Bioinformatics

    Volume 81, Issue 11, November 2013, Pages: 1931–1943, Hannes H. Loeffler and Martyn D. Winn

    Article first published online : 18 AUG 2013, DOI: 10.1002/prot.24339

  14. An effective Coarse-grained model for biological simulations: Recent refinements and validations

    Proteins: Structure, Function, and Bioinformatics

    Volume 82, Issue 7, July 2014, Pages: 1168–1185, Spyridon Vicatos, Anna Rychkova, Shayantani Mukherjee and Arieh Warshel

    Article first published online : 6 DEC 2013, DOI: 10.1002/prot.24482

  15. Temperature-accelerated molecular dynamics gives insights into globular conformations sampled in the free state of the AC catalytic domain

    Proteins: Structure, Function, and Bioinformatics

    Volume 82, Issue 10, October 2014, Pages: 2483–2496, Edithe Selwa, Tru Huynh, Giovanni Ciccotti, Luca Maragliano and Thérèse E. Malliavin

    Article first published online : 9 JUN 2014, DOI: 10.1002/prot.24612

  16. Virtual screening on an α-helix to β-strand switchable region of the FGFR2 extracellular domain revealed positive and negative modulators

    Proteins: Structure, Function, and Bioinformatics

    Volume 82, Issue 11, November 2014, Pages: 2982–2997, Constantino Diaz, Herbert Corentin, Vermat Thierry, Alcouffe Chantal, Bozec Tanguy, Sibrac David, Herbert Jean-Marc, Ferrara Pascual, Bono Françoise and Ferran Edgardo

    Article first published online : 30 AUG 2014, DOI: 10.1002/prot.24657

  17. Exploring the multiscale signaling behavior of phototropin1 from Chlamydomonas reinhardtii using a full-residue space kinetic Monte Carlo molecular dynamics technique

    Proteins: Structure, Function, and Bioinformatics

    Volume 82, Issue 9, September 2014, Pages: 2018–2040, Emanuel Peter, Bernhard Dick, Ivan Stambolic and Stephan A. Baeurle

    Article first published online : 16 APR 2014, DOI: 10.1002/prot.24556

  18. Atomistic mechanisms of huntingtin N-terminal fragment insertion on a phospholipid bilayer revealed by molecular dynamics simulations

    Proteins: Structure, Function, and Bioinformatics

    Volume 82, Issue 7, July 2014, Pages: 1409–1427, Sébastien Côté, Guanghong Wei and Normand Mousseau

    Article first published online : 18 FEB 2014, DOI: 10.1002/prot.24509

  19. The influenza fusion peptide promotes lipid polar head intrusion through hydrogen bonding with phosphates and N-terminal membrane insertion depth

    Proteins: Structure, Function, and Bioinformatics

    Volume 82, Issue 9, September 2014, Pages: 2118–2127, Sébastien Légaré and Patrick Lagüe

    Article first published online : 16 APR 2014, DOI: 10.1002/prot.24568

  20. You have full text access to this OnlineOpen article
    DockRank: Ranking docked conformations using partner-specific sequence homology-based protein interface prediction

    Proteins: Structure, Function, and Bioinformatics

    Volume 82, Issue 2, February 2014, Pages: 250–267, Li C. Xue, Rafael A. Jordan, EL-Manzalawy Yasser, Drena Dobbs and Vasant Honavar

    Article first published online : 16 OCT 2013, DOI: 10.1002/prot.24370