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There are 27716 results for: content related to: Knowledge-based protein secondary structure assignment

  1. Secondary Structure Assignment

    Structural Bioinformatics, Volume 44

    Claus A. F. Andersen, Burkhard Rost, Pages: 339–363, 2005

    Published Online : 28 JAN 2005, DOI: 10.1002/0471721204.ch17

  2. Assessing secondary structure assignment of protein structures by using pairwise sequence-alignment benchmarks

    Proteins: Structure, Function, and Bioinformatics

    Volume 71, Issue 1, April 2008, Pages: 61–67, Wei Zhang, A. Keith Dunker and Yaoqi Zhou

    Version of Record online : 11 OCT 2007, DOI: 10.1002/prot.21654

  3. New method for protein secondary structure assignment based on a simple topological descriptor

    Proteins: Structure, Function, and Bioinformatics

    Volume 60, Issue 3, 15 August 2005, Pages: 513–524, Todd Taylor, Margarita Rivera, Glenda Wilson and Iosif I. Vaisman

    Version of Record online : 10 MAY 2005, DOI: 10.1002/prot.20471

  4. You have free access to this content
    Analysis of loop boundaries using different local structure assignment methods

    Protein Science

    Volume 18, Issue 9, September 2009, Pages: 1869–1881, Manoj Tyagi, Aurélie Bornot, Bernard Offmann and Alexandre G. de Brevern

    Version of Record online : 15 JUL 2009, DOI: 10.1002/pro.198

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    Estimation of the number of α-helical and β-strand segments in proteins using circular dichroism spectroscopy

    Protein Science

    Volume 8, Issue 2, 1999, Pages: 370–380, Narasimha Sreerama, Sergei Y.U. Venyaminov and Robert W. Woody

    Version of Record online : 31 DEC 2008, DOI: 10.1110/ps.8.2.370

  6. SPINE X: Improving protein secondary structure prediction by multistep learning coupled with prediction of solvent accessible surface area and backbone torsion angles

    Journal of Computational Chemistry

    Volume 33, Issue 3, 30 January 2012, Pages: 259–267, Eshel Faraggi, Tuo Zhang, Yuedong Yang, Lukasz Kurgan and Yaoqi Zhou

    Version of Record online : 1 NOV 2011, DOI: 10.1002/jcc.21968

  7. Protein secondary structure assignment through Voronoï tessellation

    Proteins: Structure, Function, and Bioinformatics

    Volume 55, Issue 3, 15 May 2004, Pages: 519–528, Franck Dupuis, Jean-François Sadoc and Jean-Paul Mornon

    Version of Record online : 1 APR 2004, DOI: 10.1002/prot.10566

  8. PCASSO: A fast and efficient Cα-based method for accurately assigning protein secondary structure elements

    Journal of Computational Chemistry

    Volume 35, Issue 24, September 15, 2014, Pages: 1757–1761, Sean M. Law, Aaron T. Frank and Charles L. Brooks III

    Version of Record online : 4 JUL 2014, DOI: 10.1002/jcc.23683

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    The optimization of protein secondary structure determination with infrared and circular dichroism spectra

    European Journal of Biochemistry

    Volume 271, Issue 14, July 2004, Pages: 2937–2948, Keith A. Oberg, Jean-Marie Ruysschaert and Erik Goormaghtigh

    Version of Record online : 21 JUN 2004, DOI: 10.1111/j.1432-1033.2004.04220.x

  10. You have full text access to this OnlineOpen article
    Wordom: A user-friendly program for the analysis of molecular structures, trajectories, and free energy surfaces

    Journal of Computational Chemistry

    Volume 32, Issue 6, 30 April 2011, Pages: 1183–1194, Michele Seeber, Angelo Felline, Francesco Raimondi, Stefanie Muff, Ran Friedman, Francesco Rao, Amedeo Caflisch and Francesca Fanelli

    Version of Record online : 29 NOV 2010, DOI: 10.1002/jcc.21688

  11. A 3D building blocks approach to analyzing and predicting structure of proteins

    Proteins: Structure, Function, and Bioinformatics

    Volume 5, Issue 4, 1989, Pages: 355–373, Ron Unger, David Harel, Scot Wherland and Joel L. Sussman

    Version of Record online : 3 FEB 2004, DOI: 10.1002/prot.340050410

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    Evaluation and improvement of multiple sequence methods for protein secondary structure prediction

    Proteins: Structure, Function, and Bioinformatics

    Volume 34, Issue 4, 1 March 1999, Pages: 508–519, James A. Cuff and Geoffrey J. Barton

    Version of Record online : 17 SEP 1999, DOI: 10.1002/(SICI)1097-0134(19990301)34:4<508::AID-PROT10>3.0.CO;2-4

  13. First Steps of Protein Structure Prediction

    Prediction of Protein Structures, Functions, and Interactions

    Karolina Majorek, Łukasz Kozłowski, Marcin Jąkalski, Janusz M. Bujnicki, Pages: 39–62, 2008

    Published Online : 18 DEC 2008, DOI: 10.1002/9780470741894.ch2

  14. A new catalog of protein β-sheets

    Proteins: Structure, Function, and Bioinformatics

    Volume 61, Issue 3, 15 November 2005, Pages: 545–558, Marc Parisien and François Major

    Version of Record online : 23 SEP 2005, DOI: 10.1002/prot.20677

  15. Identification of local variations within secondary structures of proteins

    Acta Crystallographica Section D

    Volume 71, Issue 5, May 2015, Pages: 1077–1086, Prasun Kumar and Manju Bansal

    DOI: 10.1107/S1399004715003144

  16. Protein secondary-structure description with a coarse-grained model

    Acta Crystallographica Section D

    Volume 71, Issue 7, July 2015, Pages: 1411–1422, Gerald R. Kneller and Konrad Hinsen

    DOI: 10.1107/S1399004715007191

  17. Comprehensive description of protein structures using protein folding shape code

    Proteins: Structure, Function, and Bioinformatics

    Volume 71, Issue 3, 15 May 2008, Pages: 1497–1518, Jiaan Yang

    Version of Record online : 23 JAN 2008, DOI: 10.1002/prot.21932

  18. Hidden Markov models that use predicted local structure for fold recognition: Alphabets of backbone geometry

    Proteins: Structure, Function, and Bioinformatics

    Volume 51, Issue 4, 1 June 2003, Pages: 504–514, Rachel Karchin, Melissa Cline, Yael Mandel-Gutfreund and Kevin Karplus

    Version of Record online : 22 APR 2003, DOI: 10.1002/prot.10369

  19. Optimized representations and maximal information in proteins

    Proteins: Structure, Function, and Bioinformatics

    Volume 38, Issue 2, 1 February 2000, Pages: 149–164, Armando D. Solis and S. Rackovsky

    Version of Record online : 17 FEB 2000, DOI: 10.1002/(SICI)1097-0134(20000201)38:2<149::AID-PROT4>3.0.CO;2-#

  20. Patterns, structures, and amino acid frequencies in structural building blocks, a protein secondary structure classification scheme

    Proteins: Structure, Function, and Bioinformatics

    Volume 27, Issue 2, February 1997, Pages: 249–271, Jacquelyn S. Fetrow, Michael J. Palumbo and George Berg

    Version of Record online : 7 DEC 1998, DOI: 10.1002/(SICI)1097-0134(199702)27:2<249::AID-PROT11>3.0.CO;2-M