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There are 23257 results for: content related to: Mining of protein contact maps for protein fold prediction

  1. Evolution and similarity evaluation of protein structures in contact map space

    Proteins: Structure, Function, and Bioinformatics

    Volume 59, Issue 2, 1 May 2005, Pages: 196–204, Nitin Gupta, Nitin Mangal and Somenath Biswas

    Article first published online : 22 FEB 2005, DOI: 10.1002/prot.20415

  2. Protein fold recognition and dynamics in the space of contact maps

    Proteins: Structure, Function, and Bioinformatics

    Volume 26, Issue 4, December 1996, Pages: 391–410, Dr. Leonid Mirny and Dr. Eytan Domany

    Article first published online : 7 DEC 1998, DOI: 10.1002/(SICI)1097-0134(199612)26:4<391::AID-PROT3>3.0.CO;2-F

  3. Contact Map Prediction by Machine Learning

    Introduction to Protein Structure Prediction: Methods and Algorithms

    Alberto J.M. Martin, Catherine Mooney, Ian Walsh, Gianluca Pollastri, Pages: 137–163, 2010

    Published Online : 7 SEP 2010, DOI: 10.1002/9780470882207.ch7

  4. You have free access to this content
    Folding Lennard-Jones proteins by a contact potential

    Proteins: Structure, Function, and Bioinformatics

    Volume 37, Issue 4, 1 December 1999, Pages: 544–553, Cecilia Clementi, Michele Vendruscolo, Amos Maritan and Eytan Domany

    Article first published online : 25 JAN 2000, DOI: 10.1002/(SICI)1097-0134(19991201)37:4<544::AID-PROT5>3.0.CO;2-7

  5. You have free access to this content
    Index

    Introduction to Protein Structure Prediction: Methods and Algorithms

    Huzefa Rangwala, George Karypis, Pages: 477–500, 2010

    Published Online : 7 SEP 2010, DOI: 10.1002/9780470882207.index

  6. Predicting residue–residue contact maps by a two-layer, integrated neural-network method

    Proteins: Structure, Function, and Bioinformatics

    Volume 76, Issue 1, July 2009, Pages: 176–183, Bin Xue, Eshel Faraggi and Yaoqi Zhou

    Article first published online : 18 NOV 2008, DOI: 10.1002/prot.22329

  7. VISIO-SPATIAL CASE-BASED REASONING: A CASE STUDY IN PREDICTION OF PROTEIN STRUCTURE

    Computational Intelligence

    Volume 22, Issue 3-4, August/November 2006, Pages: 194–207, Jim Davies, Janice Glasgow and Tony Kuo

    Article first published online : 9 NOV 2006, DOI: 10.1111/j.1467-8640.2006.00283.x

  8. Designing cooperativity into the designed protein Top7

    Proteins: Structure, Function, and Bioinformatics

    Volume 82, Issue 3, March 2014, Pages: 364–374, Shilpa Yadahalli and Shachi Gosavi

    Article first published online : 17 OCT 2013, DOI: 10.1002/prot.24393

  9. Predicting interresidue contacts using templates and pathways

    Proteins: Structure, Function, and Bioinformatics

    Volume 53, Issue S6, 2003, Pages: 497–502, Yu Shao and Christopher Bystroff

    Article first published online : 15 OCT 2003, DOI: 10.1002/prot.10539

  10. Large-scale data mining using genetics-based machine learning

    Wiley Interdisciplinary Reviews: Data Mining and Knowledge Discovery

    Volume 3, Issue 1, January/February 2013, Pages: 37–61, Jaume Bacardit and Xavier Llorà

    Article first published online : 9 JAN 2013, DOI: 10.1002/widm.1078

  11. CASP6 assessment of contact prediction

    Proteins: Structure, Function, and Bioinformatics

    Volume 61, Issue S7, 2005, Pages: 214–224, Osvaldo Graña, David Baker, Robert M. MacCallum, Jens Meiler, Marco Punta, Burkhard Rost, Michael L. Tress and Alfonso Valencia

    Article first published online : 26 SEP 2005, DOI: 10.1002/prot.20739

  12. Refinement of the long-range order parameter in predicting folding rates of two-state proteins

    Biopolymers

    Volume 91, Issue 11, November 2009, Pages: 928–935, B. Harihar and S. Selvaraj

    Article first published online : 14 JUL 2009, DOI: 10.1002/bip.21281

  13. How to guarantee optimal stability for most representative structures in the protein data bank

    Proteins: Structure, Function, and Bioinformatics

    Volume 44, Issue 2, 1 August 2001, Pages: 79–96, Ugo Bastolla, Jochen Farwer, Ernst Walter Knapp and Michele Vendruscolo

    Article first published online : 14 MAY 2001, DOI: 10.1002/prot.1075

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    From fold predictions to function predictions: Automation of functional site conservation analysis for functional genome predictions

    Protein Science

    Volume 8, Issue 5, 1999, Pages: 1104–1115, Baohong Zhang, Leszek Rychlewski, Krzysztof Pawlowski, Jacquelyn S. Fetrow, Jeffrey Skolnick and Adam Godzik

    Article first published online : 31 DEC 2008, DOI: 10.1110/ps.8.5.1104

  15. Relationship between energy distribution and fold stability: Insights from molecular dynamics simulations of native and mutant proteins

    Proteins: Structure, Function, and Bioinformatics

    Volume 72, Issue 2, 1 August 2008, Pages: 660–672, Giulia Morra and Giorgio Colombo

    Article first published online : 4 FEB 2008, DOI: 10.1002/prot.21963

  16. Contact Maps

    Standard Article

    Encyclopedia of Molecular Biology

    Andrzej Kolinski, Adam Godzik and Jeffrey Skolnick

    Published Online : 15 JAN 2002, DOI: 10.1002/047120918X.emb0308

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    Fold prediction by a hierarchy of sequence, threading, and modeling methods

    Protein Science

    Volume 7, Issue 6, June 1998, Pages: 1431–1440, ŁUkasz Jaroszwski, Leszek Rychlewski, Baohong Zhang and Adam Godzik

    Article first published online : 31 DEC 2008, DOI: 10.1002/pro.5560070620

  18. Triage protein fold prediction

    Proteins: Structure, Function, and Bioinformatics

    Volume 48, Issue 4, 1 September 2002, Pages: 654–663, Hongxian He, Gregory McAllister and Temple F. Smith

    Article first published online : 8 JUL 2002, DOI: 10.1002/prot.10194

  19. The role of atomic level steric effects and attractive forces in protein folding

    Proteins: Structure, Function, and Bioinformatics

    Volume 80, Issue 2, February 2012, Pages: 362–373, Heiko Lammert, Peter G. Wolynes and José N. Onuchic

    Article first published online : 12 NOV 2011, DOI: 10.1002/prot.23187

  20. Fold recognition with minimal gaps

    Proteins: Structure, Function, and Bioinformatics

    Volume 51, Issue 4, 1 June 2003, Pages: 531–543, William Chen, Leonid Mirny and Eugene I. Shakhnovich

    Article first published online : 6 MAY 2003, DOI: 10.1002/prot.10402