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There are 12515 results for: content related to: Reliable prediction of T-cell epitopes using neural networks with novel sequence representations

  1. Selecting the Right Similarity-Scoring Matrix

    Unit

    Current Protocols in Bioinformatics

    3:3.5.1–3.5.9

    William R. Pearson

    Published Online : 15 OCT 2013, DOI: 10.1002/0471250953.bi0305s43

  2. Statistical potential-based amino acid similarity matrices for aligning distantly related protein sequences

    Proteins: Structure, Function, and Bioinformatics

    Volume 64, Issue 3, 15 August 2006, Pages: 587–600, Yen Hock Tan, He Huang and Daisuke Kihara

    Article first published online : 23 JUN 2006, DOI: 10.1002/prot.21020

  3. Context-specific amino acid substitution matrices and their use in the detection of protein homologs

    Proteins: Structure, Function, and Bioinformatics

    Volume 71, Issue 2, 1 May 2008, Pages: 910–919, Nalin C. W. Goonesekere and Byungkook Lee

    Article first published online : 14 NOV 2007, DOI: 10.1002/prot.21775

  4. Statistical Significance in Biological Sequence Comparison

    Standard Article

    Handbook of Statistical Genetics

    W.R. Pearson and T.C. Wood

    Published Online : 15 JUL 2004, DOI: 10.1002/0470022620.bbc02

  5. You have free access to this content
    Protein database searches using compositionally adjusted substitution matrices

    FEBS Journal

    Volume 272, Issue 20, October 2005, Pages: 5101–5109, Stephen F. Altschul, John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schäffer and Yi-Kuo Yu

    Article first published online : 7 OCT 2005, DOI: 10.1111/j.1742-4658.2005.04945.x

  6. You have free access to this content
    NetMHCstab – predicting stability of peptide–MHC-I complexes; impacts for cytotoxic T lymphocyte epitope discovery

    Immunology

    Volume 141, Issue 1, January 2014, Pages: 18–26, Kasper W. Jørgensen, Michael Rasmussen, Søren Buus and Morten Nielsen

    Article first published online : 10 DEC 2013, DOI: 10.1111/imm.12160

  7. BATMAS30: Amino acid substitution matrix for alignment of bacterial transporters

    Proteins: Structure, Function, and Bioinformatics

    Volume 51, Issue 1, 1 April 2003, Pages: 85–95, Roman A. Sutormin, Aleksandra B. Rakhmaninova and Mikhail S. Gelfand

    Article first published online : 9 FEB 2003, DOI: 10.1002/prot.10308

  8. Enriching the sequence substitution matrix by structural information

    Proteins: Structure, Function, and Bioinformatics

    Volume 54, Issue 1, 1 January 2004, Pages: 41–48, Octavian Teodorescu, Tamara Galor, Jaroslaw Pillardy and Ron Elber

    Article first published online : 22 OCT 2003, DOI: 10.1002/prot.10474

  9. Periodic distributions of hydrophobic amino acids allows the definition of fundamental building blocks to align distantly related proteins

    Proteins: Structure, Function, and Bioinformatics

    Volume 67, Issue 3, 15 May 2007, Pages: 695–708, J. Baussand, C. Deremble and A. Carbone

    Article first published online : 13 FEB 2007, DOI: 10.1002/prot.21319

  10. NdPASA: A novel pairwise protein sequence alignment algorithm that incorporates neighbor-dependent amino acid propensities

    Proteins: Structure, Function, and Bioinformatics

    Volume 58, Issue 3, 15 February 2005, Pages: 628–637, Junwen Wang and Jin-An Feng

    Article first published online : 22 DEC 2004, DOI: 10.1002/prot.20359

  11. Masking of veto function in vivo by activated CD4+ T lymphocytes

    European Journal of Immunology

    Volume 19, Issue 4, April 1989, Pages: 643–648, Hans-Georg Rammensee and Daniela Hügin

    Article first published online : 22 NOV 2005, DOI: 10.1002/eji.1830190411

  12. You have free access to this content
    Identification of tumor-associated MHC class I ligands by a novel T cell-independent approach

    European Journal of Immunology

    Volume 30, Issue 8, August 2000, Pages: 2216–2225, Markus Schirle, Wieland Keilholz, Bernd Weber, Cécile Gouttefangeas, Tilman Dumrese, Horst Dieter Becker, Stefan Stevanović and Hans-Georg Rammensee

    Article first published online : 29 NOV 2000, DOI: 10.1002/1521-4141(2000)30:8<2216::AID-IMMU2216>3.0.CO;2-7

  13. Crystal structures of two peptide–HLA-B*1501 complexes; structural characterization of the HLA-B62 supertype

    Acta Crystallographica Section D

    Volume 62, Issue 11, November 2006, Pages: 1300–1310, Søren Buus, Thomas Blicher, Jette Kastrup, Michael Gajhede, Gustav Røder, Sune Justesen, Birthe Johannesen and Ole Kristensen

    DOI: 10.1107/S0907444906027636

  14. Mutual tolerization of histoincompatible lymphocytes

    European Journal of Immunology

    Volume 17, Issue 6, 1987, Pages: 893–895, Hans-Georg Rammensee and Michael J. Bevan

    Article first published online : 17 NOV 2005, DOI: 10.1002/eji.1830170625

  15. SSALN: An alignment algorithm using structure-dependent substitution matrices and gap penalties learned from structurally aligned protein pairs

    Proteins: Structure, Function, and Bioinformatics

    Volume 62, Issue 4, 1 March 2006, Pages: 881–891, Jian Qiu and Ron Elber

    Article first published online : 29 DEC 2005, DOI: 10.1002/prot.20854

  16. A study on protein sequence alignment quality

    Proteins: Structure, Function, and Bioinformatics

    Volume 46, Issue 3, 15 February 2002, Pages: 330–339, Arne Elofsson

    Article first published online : 8 JAN 2002, DOI: 10.1002/prot.10043

  17. BLOSUM (BLOSUM Matrix)

    Standard Article

    Dictionary of Bioinformatics and Computational Biology

    Laszlo Patthy

    Published Online : 7 APR 2014, DOI: 10.1002/9780471650126.dob0074.pub2

  18. Functional annotation by sequence-weighted structure alignments: Statistical analysis and case studies from the Protein 3000 structural genomics project in Japan

    Proteins: Structure, Function, and Bioinformatics

    Volume 72, Issue 4, September 2008, Pages: 1333–1351, Daron M. Standley, Hiroyuki Toh and Haruki Nakamura

    Article first published online : 2 APR 2008, DOI: 10.1002/prot.22015

  19. Quantitative modeling of peptide binding to TAP using support vector machine

    Proteins: Structure, Function, and Bioinformatics

    Volume 78, Issue 1, January 2010, Pages: 63–72, Carmen M. Diez-Rivero, Bernardo Chenlo, Pilar Zuluaga and Pedro A. Reche

    Article first published online : 14 JUL 2009, DOI: 10.1002/prot.22535

  20. Specificity of antigen processing for MHC class I restricted presentation is conserved between mouse and man

    European Journal of Immunology

    Volume 22, Issue 5, May 1992, Pages: 1323–1326, Kirsten Falk, Olaf Rötzschke and Hans-Georg Rammensee

    Article first published online : 7 DEC 2005, DOI: 10.1002/eji.1830220530