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There are 11491 results for: content related to: Quantifying sequence proportions in a DNA -based diet study using Ion Torrent amplicon sequencing: which counts count?

  1. Three-phase succession of autochthonous lactic acid bacteria to reach a stable ecosystem within 7 days of natural bamboo shoot fermentation as revealed by different molecular approaches

    Molecular Ecology

    Volume 24, Issue 13, July 2015, Pages: 3372–3389, Wahengbam Romi, Giasuddin Ahmed and Kumaraswamy Jeyaram

    Article first published online : 15 JUN 2015, DOI: 10.1111/mec.13237

  2. Improving accuracy of DNA diet estimates using food tissue control materials and an evaluation of proxies for digestion bias

    Molecular Ecology

    Volume 23, Issue 15, August 2014, Pages: 3706–3718, Austen C. Thomas, Simon N. Jarman, Katherine H. Haman, Andrew W. Trites and Bruce E. Deagle

    Article first published online : 24 OCT 2013, DOI: 10.1111/mec.12523

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    A metagenetic approach for revealing community structure of marine planktonic copepods

    Molecular Ecology Resources

    Volume 15, Issue 1, January 2015, Pages: 68–80, J. Hirai, M. Kuriyama, T. Ichikawa, K. Hidaka and A. Tsuda

    Article first published online : 5 JUL 2014, DOI: 10.1111/1755-0998.12294

  4. Comparative metagenomic and rRNA microbial diversity characterization using archaeal and bacterial synthetic communities

    Environmental Microbiology

    Volume 15, Issue 6, June 2013, Pages: 1882–1899, Migun Shakya, Christopher Quince, James H. Campbell, Zamin K. Yang, Christopher W. Schadt and Mircea Podar

    Article first published online : 6 FEB 2013, DOI: 10.1111/1462-2920.12086

  5. Parallel tagged amplicon sequencing of relatively long PCR products using the Illumina HiSeq platform and transcriptome assembly

    Molecular Ecology Resources

    Yan-Jie Feng, Qing-Feng Liu, Meng-Yun Chen, Dan Liang and Peng Zhang

    Article first published online : 21 MAY 2015, DOI: 10.1111/1755-0998.12429

  6. The development and characterization of a 57K single nucleotide polymorphism array for rainbow trout

    Molecular Ecology Resources

    Volume 15, Issue 3, May 2015, Pages: 662–672, Y. Palti, G. Gao, S. Liu, M. P. Kent, S. Lien, M. R. Miller, C. E. Rexroad III and T. Moen

    Article first published online : 24 OCT 2014, DOI: 10.1111/1755-0998.12337

  7. amplisas: a web server for multilocus genotyping using next-generation amplicon sequencing data

    Molecular Ecology Resources

    Alvaro Sebastian, Magdalena Herdegen, Magdalena Migalska and Jacek Radwan

    Article first published online : 26 AUG 2015, DOI: 10.1111/1755-0998.12453

  8. Double-digest RAD sequencing using Ion Proton semiconductor platform (ddRADseq-ion) with nonmodel organisms

    Molecular Ecology Resources

    Hans Recknagel, Arne Jacobs, Pawel Herzyk and Kathryn R. Elmer

    Article first published online : 6 APR 2015, DOI: 10.1111/1755-0998.12406

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    Oligotyping: differentiating between closely related microbial taxa using 16S rRNA gene data

    Methods in Ecology and Evolution

    Volume 4, Issue 12, December 2013, Pages: 1111–1119, A. Murat Eren, Loïs Maignien, Woo Jun Sul, Leslie G. Murphy, Sharon L. Grim, Hilary G. Morrison and Mitchell L. Sogin

    Article first published online : 23 OCT 2013, DOI: 10.1111/2041-210X.12114

  10. Endospore-enriched sequencing approach reveals unprecedented diversity of Firmicutes in sediments

    Environmental Microbiology Reports

    Volume 6, Issue 6, December 2014, Pages: 631–639, Tina Wunderlin, Thomas Junier, Ludovic Roussel-Delif, Nicole Jeanneret and Pilar Junier

    Article first published online : 13 JUN 2014, DOI: 10.1111/1758-2229.12179

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    Restriction site-associated DNA sequencing, genotyping error estimation and de novo assembly optimization for population genetic inference

    Molecular Ecology Resources

    Volume 15, Issue 1, January 2015, Pages: 28–41, A. Mastretta-Yanes, N. Arrigo, N. Alvarez, T. H. Jorgensen, D. Piñero and B. C. Emerson

    Article first published online : 3 JUL 2014, DOI: 10.1111/1755-0998.12291

  12. Assessing the utility of whole genome amplified DNA for next-generation molecular ecology

    Molecular Ecology Resources

    Volume 15, Issue 5, September 2015, Pages: 1079–1090, Christopher Blair, C. Ryan Campbell and Anne D. Yoder

    Article first published online : 8 FEB 2015, DOI: 10.1111/1755-0998.12376

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    De novo assembly and comparative analysis of the Ceratodon purpureus transcriptome

    Molecular Ecology Resources

    Volume 15, Issue 1, January 2015, Pages: 203–215, Péter Szövényi, Pierre-François Perroud, Aikaterini Symeonidi, Sean Stevenson, Ralph S. Quatrano, Stefan A. Rensing, Andrew C. Cuming and Stuart F. McDaniel

    Article first published online : 13 JUN 2014, DOI: 10.1111/1755-0998.12284

  14. AmpliVar: Mutation Detection in High-Throughput Sequence from Amplicon-Based Libraries

    Human Mutation

    Volume 36, Issue 4, April 2015, Pages: 411–418, Arthur L. Hsu, Olga Kondrashova, Sebastian Lunke, Clare J. Love, Cliff Meldrum, Renate Marquis-Nicholson, Greg Corboy, Kym Pham, Matthew Wakefield, Paul M. Waring and Graham R. Taylor

    Article first published online : 16 MAR 2015, DOI: 10.1002/humu.22763

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    The trouble with quality filtering based on relative Cramér-Rao lower bounds

    Magnetic Resonance in Medicine

    Roland Kreis

    Article first published online : 6 MAR 2015, DOI: 10.1002/mrm.25568

  16. The ecological and genetic basis of convergent thick-lipped phenotypes in cichlid fishes

    Molecular Ecology

    Volume 22, Issue 3, February 2013, Pages: 670–684, Marco Colombo, Eveline T. Diepeveen, Moritz Muschick, M. EMILIA Santos, Adrian Indermaur, Nicolas Boileau, Marta Barluenga and Walter Salzburger

    Article first published online : 11 OCT 2012, DOI: 10.1111/mec.12029

  17. Large-scale fungal diversity assessment in the Andean Yungas forests reveals strong community turnover among forest types along an altitudinal gradient

    Molecular Ecology

    Volume 23, Issue 10, May 2014, Pages: 2452–2472, József Geml, Nicolás Pastor, Lisandro Fernandez, Silvia Pacheco, Tatiana A. Semenova, Alejandra G. Becerra, Christian Y. Wicaksono and Eduardo R. Nouhra

    Article first published online : 14 MAY 2014, DOI: 10.1111/mec.12765

  18. PhytoREF: a reference database of the plastidial 16S rRNA gene of photosynthetic eukaryotes with curated taxonomy

    Molecular Ecology Resources

    Johan Decelle, Sarah Romac, Rowena F. Stern, El Mahdi Bendif, Adriana Zingone, Stéphane Audic, Michael D. Guiry, Laure Guillou, Désiré Tessier, Florence Le Gall, Priscillia Gourvil, Adriana L. Dos Santos, Ian Probert, Daniel Vaulot, Colomban de Vargas and Richard Christen

    Article first published online : 6 APR 2015, DOI: 10.1111/1755-0998.12401

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    PIPITS: an automated pipeline for analyses of fungal internal transcribed spacer sequences from the Illumina sequencing platform

    Methods in Ecology and Evolution

    Volume 6, Issue 8, August 2015, Pages: 973–980, Hyun S. Gweon, Anna Oliver, Joanne Taylor, Tim Booth, Melanie Gibbs, Daniel S. Read, Robert I. Griffiths and Karsten Schonrogge

    Article first published online : 25 MAY 2015, DOI: 10.1111/2041-210X.12399

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    Genotyping-in-Thousands by sequencing (GT-seq): A cost effective SNP genotyping method based on custom amplicon sequencing

    Molecular Ecology Resources

    Volume 15, Issue 4, July 2015, Pages: 855–867, Nathan R. Campbell, Stephanie A. Harmon and Shawn R. Narum

    Article first published online : 25 DEC 2014, DOI: 10.1111/1755-0998.12357