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There are 14395 results for: content related to: The effects of read length, quality and quantity on microsatellite discovery and primer development: from I llumina to P ac B io

  1. Double-digest RAD sequencing using Ion Proton semiconductor platform (ddRADseq-ion) with nonmodel organisms

    Molecular Ecology Resources

    Volume 15, Issue 6, November 2015, Pages: 1316–1329, Hans Recknagel, Arne Jacobs, Pawel Herzyk and Kathryn R. Elmer

    Article first published online : 6 APR 2015, DOI: 10.1111/1755-0998.12406

  2. Microsatellite markers from the Ion Torrent: a multi-species contrast to 454 shotgun sequencing

    Molecular Ecology Resources

    Volume 14, Issue 3, May 2014, Pages: 554–568, Carole P. Elliott, Neal J. Enright, Richard J. N. Allcock, Michael G. Gardner, Emese Meglécz, Janet Anthony and Siegfried L. Krauss

    Article first published online : 29 NOV 2013, DOI: 10.1111/1755-0998.12192

  3. Quantifying sequence proportions in a DNA-based diet study using Ion Torrent amplicon sequencing: which counts count?

    Molecular Ecology Resources

    Volume 13, Issue 4, July 2013, Pages: 620–633, Bruce E. Deagle, Austen C. Thomas, Amanda K. Shaffer, Andrew W. Trites and Simon N. Jarman

    Article first published online : 17 APR 2013, DOI: 10.1111/1755-0998.12103

  4. SNP discovery in nonmodel organisms: strand bias and base-substitution errors reduce conversion rates

    Molecular Ecology Resources

    Volume 15, Issue 4, July 2015, Pages: 723–736, Anders Gonçalves da Silva, William Barendse, James W. Kijas, Wes C. Barris, Sean McWilliam, Rowan J. Bunch, Russell McCullough, Blair Harrison, A. Rus Hoelzel and Phillip R. England

    Article first published online : 23 NOV 2014, DOI: 10.1111/1755-0998.12343

  5. Efficient and sensitive identification and quantification of airborne pollen using next-generation DNA sequencing

    Molecular Ecology Resources

    Volume 15, Issue 1, January 2015, Pages: 8–16, Ken Kraaijeveld, Letty A. de Weger, Marina Ventayol García, Henk Buermans, Jeroen Frank, Pieter S. Hiemstra and Johan T. den Dunnen

    Article first published online : 17 JUN 2014, DOI: 10.1111/1755-0998.12288

  6. You have full text access to this OnlineOpen article
    Less is more: extreme genome complexity reduction with ddRAD using Ion Torrent semiconductor technology

    Molecular Ecology Resources

    Volume 15, Issue 5, September 2015, Pages: 1145–1152, Lilian Pukk, Freed Ahmad, Shihab Hasan, Veljo Kisand, Riho Gross and Anti Vasemägi

    Article first published online : 10 MAR 2015, DOI: 10.1111/1755-0998.12392

  7. metaxa2: improved identification and taxonomic classification of small and large subunit rRNA in metagenomic data

    Molecular Ecology Resources

    Volume 15, Issue 6, November 2015, Pages: 1403–1414, Johan Bengtsson-Palme, Martin Hartmann, Karl Martin Eriksson, Chandan Pal, Kaisa Thorell, Dan Göran Joakim Larsson and Rolf Henrik Nilsson

    Article first published online : 23 MAR 2015, DOI: 10.1111/1755-0998.12399

  8. amplisas: a web server for multilocus genotyping using next-generation amplicon sequencing data

    Molecular Ecology Resources

    Volume 16, Issue 2, March 2016, Pages: 498–510, Alvaro Sebastian, Magdalena Herdegen, Magdalena Migalska and Jacek Radwan

    Article first published online : 26 AUG 2015, DOI: 10.1111/1755-0998.12453

  9. Impact of primer choice on characterization of orchid mycorrhizal communities using 454 pyrosequencing

    Molecular Ecology Resources

    Volume 14, Issue 4, July 2014, Pages: 679–699, Michael Waud, Pieter Busschaert, Stefan Ruyters, Hans Jacquemyn and Bart Lievens

    Article first published online : 14 MAR 2014, DOI: 10.1111/1755-0998.12229

  10. Impacts of degraded DNA on restriction enzyme associated DNA sequencing (RADSeq)

    Molecular Ecology Resources

    Volume 15, Issue 6, November 2015, Pages: 1304–1315, Carly F. Graham, Travis C. Glenn, Andrew G. McArthur, Douglas R. Boreham, Troy Kieran, Stacey Lance, Richard G. Manzon, Jessica A. Martino, Todd Pierson, Sean M. Rogers, Joanna Y. Wilson and Christopher M. Somers

    Article first published online : 1 APR 2015, DOI: 10.1111/1755-0998.12404

  11. The Quantification of Representative Sequences pipeline for amplicon sequencing: case study on within-population ITS1 sequence variation in a microparasite infecting Daphnia

    Molecular Ecology Resources

    Volume 15, Issue 6, November 2015, Pages: 1385–1395, E. González-Tortuero, J. Rusek, A. Petrusek, S. Gießler, D. Lyras, S. Grath, F. Castro-Monzón and J. Wolinska

    Article first published online : 5 MAR 2015, DOI: 10.1111/1755-0998.12396

  12. Universal and blocking primer mismatches limit the use of high-throughput DNA sequencing for the quantitative metabarcoding of arthropods

    Molecular Ecology Resources

    Volume 15, Issue 4, July 2015, Pages: 819–830, J. Piñol, G. Mir, P. Gomez-Polo and N. Agustí

    Article first published online : 23 DEC 2014, DOI: 10.1111/1755-0998.12355

  13. Tag jumps illuminated – reducing sequence-to-sample misidentifications in metabarcoding studies

    Molecular Ecology Resources

    Volume 15, Issue 6, November 2015, Pages: 1289–1303, Ida Bærholm Schnell, Kristine Bohmann and M. Thomas P. Gilbert

    Article first published online : 20 MAR 2015, DOI: 10.1111/1755-0998.12402

  14. You have full text access to this OnlineOpen article
    Rapid and accurate taxonomic classification of insect (class Insecta) cytochrome c oxidase subunit 1 (COI) DNA barcode sequences using a naïve Bayesian classifier

    Molecular Ecology Resources

    Volume 14, Issue 5, September 2014, Pages: 929–942, Teresita M. Porter, Joel F. Gibson, Shadi Shokralla, Donald J. Baird, G. Brian Golding and Mehrdad Hajibabaei

    Article first published online : 19 MAR 2014, DOI: 10.1111/1755-0998.12240

  15. Next-generation sequencing workflow for assembly of nonmodel mitogenomes exemplified with North Pacific albatrosses (Phoebastria spp.)

    Molecular Ecology Resources

    Volume 15, Issue 4, July 2015, Pages: 893–902, Z. T. Lounsberry, S. K. Brown, P. W. Collins, R. W. Henry, S. D. Newsome and B. N. Sacks

    Article first published online : 13 JAN 2015, DOI: 10.1111/1755-0998.12365

  16. Restriction site-associated DNA sequencing, genotyping error estimation and de novo assembly optimization for population genetic inference

    Molecular Ecology Resources

    Volume 15, Issue 1, January 2015, Pages: 28–41, A. Mastretta-Yanes, N. Arrigo, N. Alvarez, T. H. Jorgensen, D. Piñero and B. C. Emerson

    Article first published online : 3 JUL 2014, DOI: 10.1111/1755-0998.12291

  17. Genomics of Compositae crops: reference transcriptome assemblies and evidence of hybridization with wild relatives

    Molecular Ecology Resources

    Volume 14, Issue 1, January 2014, Pages: 166–177, Kathryn A. Hodgins, Zhao Lai, Luiz O. Oliveira, David W. Still, Moira Scascitelli, Michael S. Barker, Nolan C. Kane, Hannes Dempewolf, Alex Kozik, Richard V. Kesseli, John M. Burke, Richard W. Michelmore and Loren H. Rieseberg

    Article first published online : 18 SEP 2013, DOI: 10.1111/1755-0998.12163

  18. A pragmatic approach to the analysis of diets of generalist predators: the use of next-generation sequencing with no blocking probes

    Molecular Ecology Resources

    Volume 14, Issue 1, January 2014, Pages: 18–26, J. Piñol, V. San Andrés, E. L. Clare, G. Mir and W. O. C. Symondson

    Article first published online : 20 AUG 2013, DOI: 10.1111/1755-0998.12156

  19. You have free access to this content
    Principles of transcriptome analysis and gene expression quantification: an RNA-seq tutorial

    Molecular Ecology Resources

    Volume 13, Issue 4, July 2013, Pages: 559–572, Jochen B. W. Wolf

    Article first published online : 27 APR 2013, DOI: 10.1111/1755-0998.12109

  20. You have free access to this content
    Prevention, diagnosis and treatment of high-throughput sequencing data pathologies

    Molecular Ecology

    Volume 23, Issue 7, April 2014, Pages: 1679–1700, Xiaofan Zhou and Antonis Rokas

    Article first published online : 13 MAR 2014, DOI: 10.1111/mec.12680