Search Results

There are 31985 results for: content related to: Short reads and nonmodel species: exploring the complexities of next-generation sequence assembly and SNP discovery in the absence of a reference genome

  1. The design and cross-population application of a genome-wide SNP chip for the great tit Parus major

    Molecular Ecology Resources

    Volume 12, Issue 4, July 2012, Pages: 753–770, NIKKIE E. M. Van BERS, ANNA W. SANTURE, KEES Van OERS, ISABELLE DE CAUWER, BERT W. DIBBITS, CHRISTA MATEMAN, RICHARD P. M. A. CROOIJMANS, BEN C. SHELDON, MARCEL E. VISSER, MARTIEN A. M. GROENEN and JON SLATE

    Version of Record online : 5 APR 2012, DOI: 10.1111/j.1755-0998.2012.03141.x

  2. Genomic exploration and molecular marker development in a large and complex conifer genome using RADseq and mRNAseq

    Molecular Ecology Resources

    Volume 15, Issue 3, May 2015, Pages: 601–612, M.-J. Karam, F. Lefèvre, M. Bou Dagher-Kharrat, S. Pinosio and G.G. Vendramin

    Version of Record online : 3 OCT 2014, DOI: 10.1111/1755-0998.12329

  3. Reference-free transcriptome assembly in non-model animals from next-generation sequencing data

    Molecular Ecology Resources

    Volume 12, Issue 5, September 2012, Pages: 834–845, V. CAHAIS, P. GAYRAL, G. TSAGKOGEORGA, J. MELO-FERREIRA, M. BALLENGHIEN, L. WEINERT, Y. CHIARI, K. BELKHIR, V. RANWEZ and N. GALTIER

    Version of Record online : 30 APR 2012, DOI: 10.1111/j.1755-0998.2012.03148.x

  4. Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing

    Molecular Ecology

    Volume 17, Issue 7, April 2008, Pages: 1636–1647, J. CRISTOBAL VERA, CHRISTOPHER W. WHEAT, HOWARD W. FESCEMYER, MIKKO J. FRILANDER, DOUGLAS L. CRAWFORD, ILKKA HANSKI and JAMES H. MARDEN

    Version of Record online : 5 FEB 2008, DOI: 10.1111/j.1365-294X.2008.03666.x

  5. SNP marker detection and genotyping in tilapia

    Molecular Ecology Resources

    Volume 12, Issue 5, September 2012, Pages: 932–941, N. E. M. Van BERS, R. P. M. A. CROOIJMANS, M. A. M. GROENEN, B. W. DIBBITS and J. KOMEN

    Version of Record online : 24 APR 2012, DOI: 10.1111/j.1755-0998.2012.03144.x

  6. You have free access to this content
    Full-length de novo assembly of RNA-seq data in pea (Pisum sativum L.) provides a gene expression atlas and gives insights into root nodulation in this species

    The Plant Journal

    Volume 84, Issue 1, October 2015, Pages: 1–19, Susete Alves-Carvalho, Grégoire Aubert, Sébastien Carrère, Corinne Cruaud, Anne-Lise Brochot, Françoise Jacquin, Anthony Klein, Chantal Martin, Karen Boucherot, Jonathan Kreplak, Corinne da Silva, Sandra Moreau, Pascal Gamas, Patrick Wincker, Jérôme Gouzy and Judith Burstin

    Version of Record online : 1 OCT 2015, DOI: 10.1111/tpj.12967

  7. Developing genomic resources in two Linum species via 454 pyrosequencing and genomic reduction

    Molecular Ecology Resources

    Volume 12, Issue 3, May 2012, Pages: 492–500, YONG-BI FU and GREGORY W. PETERSON

    Version of Record online : 18 DEC 2011, DOI: 10.1111/j.1755-0998.2011.03100.x

  8. Use of sequence data from rainbow trout and Atlantic salmon for SNP detection in Pacific salmon

    Molecular Ecology

    Volume 14, Issue 13, November 2005, Pages: 4193–4203, CHRISTIAN T. SMITH, CARITA M. ELFSTROM, LISA W. SEEB and JAMES E. SEEB

    Version of Record online : 24 OCT 2005, DOI: 10.1111/j.1365-294X.2005.02731.x

  9. SNP discovery in nonmodel organisms: strand bias and base-substitution errors reduce conversion rates

    Molecular Ecology Resources

    Volume 15, Issue 4, July 2015, Pages: 723–736, Anders Gonçalves da Silva, William Barendse, James W. Kijas, Wes C. Barris, Sean McWilliam, Rowan J. Bunch, Russell McCullough, Blair Harrison, A. Rus Hoelzel and Phillip R. England

    Version of Record online : 23 NOV 2014, DOI: 10.1111/1755-0998.12343

  10. SNP Discovery through EST Data Mining

    Next Generation Sequencing and Whole Genome Selection in Aquaculture

    Shaolin Wang, Zhanjiang (John) Liu, Pages: 91–108, 2010

    Published Online : 10 DEC 2010, DOI: 10.1002/9780470958964.ch6

  11. A large-scale gene discovery for the red palm weevil Rhynchophorus ferrugineus (Coleoptera: Curculionidae)

    Insect Science

    Volume 20, Issue 6, December 2013, Pages: 689–702, Lei Wang, Xiao-Wei Zhang, Lin-Lin Pan, Wan-Fei Liu, Da-Peng Wang, Guang-Yu Zhang, Yu-Xin Yin, An Yin, Shan-Gang Jia, Xiao-Guang Yu, Gao-Yuan Sun, Song-Nian Hu, Ibrahim S. Al-Mssallem and Jun Yu

    Version of Record online : 14 JAN 2013, DOI: 10.1111/j.1744-7917.2012.01561.x

  12. You have free access to this content
    Genome-wide SNP detection in the great tit Parus major using high throughput sequencing

    Molecular Ecology

    Volume 19, Issue s1, March 2010, Pages: 89–99, NIKKIE E. M. VAN BERS, KEES VAN OERS, HINDRIK H. D. KERSTENS, BERT W. DIBBITS, RICHARD P. M. A. CROOIJMANS, MARCEL E. VISSER and MARTIEN A. M. GROENEN

    Version of Record online : 10 FEB 2010, DOI: 10.1111/j.1365-294X.2009.04486.x

  13. You have full text access to this Open Access content
    A tailed PCR procedure for cost-effective, two-order multiplex sequencing of candidate genes in polyploid plants

    Plant Biotechnology Journal

    Volume 10, Issue 6, August 2012, Pages: 635–645, Mahmood Gholami, Wubishet A. Bekele, Joerg Schondelmaier and Rod J. Snowdon

    Version of Record online : 11 APR 2012, DOI: 10.1111/j.1467-7652.2012.00696.x

  14. You have free access to this content
    An EST-based genome scan using 454 sequencing in the marine snail Littorina saxatilis

    Journal of Evolutionary Biology

    Volume 23, Issue 9, September 2010, Pages: 2004–2016, J. GALINDO, J. W. GRAHAME and R. K. BUTLIN

    Version of Record online : 2 AUG 2010, DOI: 10.1111/j.1420-9101.2010.02071.x

  15. A unigene set for European beech (Fagus sylvatica L.) and its use to decipher the molecular mechanisms involved in dormancy regulation

    Molecular Ecology Resources

    Volume 15, Issue 5, September 2015, Pages: 1192–1204, Isabelle Lesur, Alison Bechade, Céline Lalanne, Christophe Klopp, Céline Noirot, Jean-Charles Leplé, Antoine Kremer, Christophe Plomion and Grégoire Le Provost

    Version of Record online : 30 JAN 2015, DOI: 10.1111/1755-0998.12373

  16. A combined subtractive suppression hybridization and expression profiling strategy to identify novel desiccation response transcripts from Tortula ruralis gametophytes

    Physiologia Plantarum

    Volume 136, Issue 4, August 2009, Pages: 437–460, Melvin J. Oliver, Jeremy Hudgeons, Scot E. Dowd and Paxton R. Payton

    Version of Record online : 25 APR 2009, DOI: 10.1111/j.1399-3054.2009.01245.x

  17. You have full text access to this Open Access content
    Orthology Guided Assembly in highly heterozygous crops: creating a reference transcriptome to uncover genetic diversity in Lolium perenne

    Plant Biotechnology Journal

    Volume 11, Issue 5, June 2013, Pages: 605–617, Tom Ruttink, Lieven Sterck, Antje Rohde, Christian Bendixen, Pierre Rouzé, Torben Asp, Yves Van de Peer and Isabel Roldan-Ruiz

    Version of Record online : 21 FEB 2013, DOI: 10.1111/pbi.12051

  18. You have full text access to this Open Access content
    Large-scale transcriptome characterization and mass discovery of SNPs in globe artichoke and its related taxa

    Plant Biotechnology Journal

    Volume 10, Issue 8, October 2012, Pages: 956–969, Davide Scaglione, Sergio Lanteri, Alberto Acquadro, Zhao Lai, Steven J. Knapp, Loren Rieseberg and Ezio Portis

    Version of Record online : 31 JUL 2012, DOI: 10.1111/j.1467-7652.2012.00725.x

  19. You have full text access to this Open Access content
    Transcriptome sequencing of wild chickpea as a rich resource for marker development

    Plant Biotechnology Journal

    Volume 10, Issue 6, August 2012, Pages: 690–702, Shalu Jhanwar, Pushp Priya, Rohini Garg, Swarup K. Parida, Akhilesh K. Tyagi and Mukesh Jain

    Version of Record online : 6 JUN 2012, DOI: 10.1111/j.1467-7652.2012.00712.x

  20. SNP discovery and gene annotation in the surf clam Mesodesma donacium

    Aquaculture Research

    Volume 46, Issue 5, May 2015, Pages: 1175–1187, Cristian Gallardo-Escárate, Valentina Valenzuela-Muñoz, Gustavo Núñez-Acuña and Pilar Haye

    Version of Record online : 29 AUG 2013, DOI: 10.1111/are.12273