Current Protocols in Bioinformatics

Current Protocols in Bioinformatics

Online ISBN: 9780471250951

DOI: 10.1002/0471250953

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  1. Bioinformatics
  2. Bioinformatics
    1.  
    2. Bioinformatics Fundamentals
    3. Biological Databases
    4. Cheminformatics
    5. DNA Analysis
    6. Expression Patterns
    7. Finding Genes
    8. Finding Similarities and Inferring Homologies
    9. Genome Variation
    10. Metabolomics
    11. Modeling Structure from Sequence
    12. Molecular Modeling
    13. Pathways and Molecular Interactions
    14. Phylogenetic Analysis
    15. Protein Analysis
      1. Access Guide to Human Proteinpedia
      2. Active Site Profiling to Identify Protein Functional Sites in Sequences and Structures Using the Deacon Active Site Profiler (DASP)
      3. Analyzing Molecular Interactions
      4. Analyzing Shotgun Proteomic Data with PatternLab for Proteomics
      5. Byonic: Advanced Peptide and Protein Identification Software
      6. Census for Proteome Quantification
      7. Using the DFCI Gene Index Databases for Biological Discovery
      8. Exploring Short Linear Motifs Using the ELM Database and Tools
      9. FAMS and FAMSBASE for Protein Structure
      10. Identifying Proteomic LC-MS/MS Data Sets with Bumbershoot and IDPicker
      11. Inference of Episodic Changes in Natural Selection Acting on Protein Coding Sequences via CODEML
      12. Investigating Protein Structure and Evolution with SCOP2
      13. Computing Multiple Sequence/Structure Alignments with the T-Coffee Package
      14. PatternLab: From Mass Spectra to Label-Free Differential Shotgun Proteomics
      15. Identification of Peptide Features in Precursor Spectra Using Hardklör and Krönik
      16. Predicting Peptide Retention Times for Proteomics
      17. Protein Function Prediction: Problems and Pitfalls
      18. Protein Structure and Function Prediction Using I-TASSER
      19. Searching and Navigating UniProt Databases
      20. STRAP PTM: Software Tool for Rapid Annotation and Differential Comparison of Protein Post-Translational Modifications
      21. Structure-Based pKa Calculations Using Continuum Electrostatics Methods
      22. Tempest: Accelerated MS/MS Database Search Software for Heterogeneous Computing Platforms
      23. You have free access to this content
        The Search Engine for Multi-Proteoform Complexes: An Online Tool for the Identification and Stoichiometry Determination of Protein Complexes
      24. UniProt Tools
      25. Using CATH-Gene3D to Analyze the Sequence, Structure, and Function of Proteins
      26. Using DelPhi to Compute Electrostatic Potentials and Assess Their Contribution to Interactions
      27. Using the MEROPS Database for Proteolytic Enzymes and Their Inhibitors and Substrates
      28. Using the Tools and Resources of the RCSB Protein Data Bank
    16. Proteomics
    17. Recognizing Functional Domains
    18. RNA Analysis
    19. Sequence Mapping and Assembly
  3. Cell Biology
  4. Chemical Biology
  5. Gene Expression
  6. Genetics and Genomics
  7. Genetics and Genomics
  8. Intermolecular Interactions
  9. Intermolecular Interactions
  10. Microbiology
  11. Molecular Biology
  12. Nucleic Acid Chemistry
  13. Pharmacology and Drug Discovery
  14. Protein Production, Purification, and Analysis
  15. Proteomics
  16. RNA
  17. Structural Analysis of Biomolecules
  18. Supporting Lab Techniques

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