Current Protocols in Bioinformatics

Current Protocols in Bioinformatics

Online ISBN: 9780471250951

DOI: 10.1002/0471250953

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  1. Bioinformatics
  2. Bioinformatics
    1. Bioinformatics Fundamentals
    2. Biological Databases
      1. Access Guide to Human Proteinpedia
      2. Administering GBrowse Sites with WebGBrowse
      3. Creating Databases for Biological Information: An Introduction
      4. Using the DFCI Gene Index Databases for Biological Discovery
      5. Exploring Genetic, Genomic, and Phenotypic Data at the Rat Genome Database
      6. Exploring Zebrafish Genomic, Functional and Phenotypic Data Using ZFIN
      7. Extracting Biological Meaning from Large Gene Lists with DAVID
      8. Human Mutation Databases
      9. Identifying Functional Sites Based on Prediction of Charged Group Behavior
      10. Installing and Configuring CMap
      11. Installing a Local Copy of the Reactome Web Site and Database
      12. Metaproteomics: Extracting and Mining Proteome Information to Characterize Metabolic Activities in Microbial Communities
      13. miRBase: microRNA Sequences and Annotation
      14. Modeling Biology Using Relational Databases
      15. mtDNA Variation and Analysis Using Mitomap and Mitomaster
      16. Using the NCBI Map Viewer to Browse Genomic Sequence Data
      17. PharmGKB: An Integrated Resource of Pharmacogenomic Data and Knowledge
      18. PubSearch and PubFetch: A Simple Management System for Semiautomated Retrieval and Annotation of Biological Information from the Literature
      19. Searching the Mouse Genome Informatics (MGI) Resources for Information on Mouse Biology from Genotype to Phenotype
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        Searching NCBI Databases Using Entrez
      21. Searching NCBI's dbSNP Database
      22. Searching Online Mendelian Inheritance in Man (OMIM) for Information on Genetic Loci Involved in Human Disease
      23. Searching WormBase for Information about Caenorhabditis elegans
      24. Setting Up the JBrowse Genome Browser
      25. Structured Query Language (SQL) Fundamentals
      26. Searching, Viewing, and Visualizing Data in the Biomolecular Interaction Network Database (BIND)
      27. The Human Gene Mutation Database (HGMD) and Its Exploitation in the Fields of Personalized Genomics and Molecular Evolution
      28. The Importance of Biological Databases in Biological Discovery
      29. The UCSC Genome Browser
      30. Using Apollo to Browse and Edit Genome Annotations
      31. Using Chado to Store Genome Annotation Data
      32. Using the Ensembl Genome Server to Browse Genomic Sequence Data
      33. Using the Generic Genome Browser (GBrowse)
      34. Using the Generic Synteny Browser (GBrowse_syn)
      35. Using the MetaCyc Pathway Database and the BioCyc Database Collection
      36. Using Relational Databases for Improved Sequence Similarity Searching and Large-Scale Genomic Analyses
      37. Using The Arabidopsis Information Resource (TAIR) to Find Information About Arabidopsis Genes
      38. Using the iHOP Information Resource to Mine the Biomedical Literature on Genes, Proteins, and Chemical Compounds
      39. Using the iPlant Collaborative Discovery Environment
      40. Using the KEGG Database Resource
      41. Using the Reactome Database
      42. Using the Saccharomyces Genome Database (SGD) for Analysis of Genomic Information
      43. Using the Tools and Resources of the RCSB Protein Data Bank
    3. Cheminformatics
    4. DNA Analysis
    5. Expression Patterns
    6. Finding Genes
    7. Finding Similarities and Inferring Homologies
    8. Modeling Structure from Sequence
    9. Molecular Modeling
    10. Phylogenetic Trees
    11. Protein Analysis
    12. Proteomics
    13. Recognizing Functional Domains
    14. RNA Analysis
  3. Cell Biology
  4. Chemical Biology
  5. Gene Expression
  6. Genetics and Genomics
  7. Genetics and Genomics
  8. Intermolecular Interactions
  9. Intermolecular Interactions
  10. Microbiology
  11. Molecular Biology
  12. Nucleic Acid Chemistry
  13. Pharmacology and Drug Discovery
  14. Proteomics
  15. RNA
  16. Structural Analysis of Biomolecules
  17. Supporting Lab Techniques