Current Protocols in Bioinformatics

Current Protocols in Bioinformatics

Online ISBN: 9780471250951

DOI: 10.1002/0471250953

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  1. Bioinformatics
  2. Bioinformatics
    1. Bioinformatics Fundamentals
    2. Biological Databases
      1. Access Guide to Human Proteinpedia
      2. Administering GBrowse Sites with WebGBrowse
      3. Creating Databases for Biological Information: An Introduction
      4. Using the DFCI Gene Index Databases for Biological Discovery
      5. DNA Motif Databases and Their Uses
      6. Exploring Genetic, Genomic, and Phenotypic Data at the Rat Genome Database
      7. Exploring Zebrafish Genomic, Functional and Phenotypic Data Using ZFIN
      8. Extracting Biological Meaning from Large Gene Lists with DAVID
      9. Human Mutation Databases
      10. Identifying Functional Sites Based on Prediction of Charged Group Behavior
      11. Installing a Local Copy of the Reactome Web Site and Knowledgebase
      12. Installing and Configuring CMap
      13. Investigating Protein Structure and Evolution with SCOP2
      14. You have free access to this content
        MalaCards: A Comprehensive Automatically-Mined Database of Human Diseases
      15. Metaproteomics: Extracting and Mining Proteome Information to Characterize Metabolic Activities in Microbial Communities
      16. miRBase: microRNA Sequences and Annotation
      17. Modeling Biology Using Relational Databases
      18. mtDNA Variation and Analysis Using Mitomap and Mitomaster
      19. Using the NCBI Map Viewer to Browse Genomic Sequence Data
      20. PharmGKB: An Integrated Resource of Pharmacogenomic Data and Knowledge
      21. PubSearch and PubFetch: A Simple Management System for Semiautomated Retrieval and Annotation of Biological Information from the Literature
      22. Searching and Navigating UniProt Databases
      23. Searching the Mouse Genome Informatics (MGI) Resources for Information on Mouse Biology from Genotype to Phenotype
      24. You have free access to this content
        Searching NCBI Databases Using Entrez
      25. Searching NCBI's dbSNP Database
      26. Searching Online Mendelian Inheritance in Man (OMIM) for Information on Genetic Loci Involved in Human Disease
      27. Searching WormBase for Information about Caenorhabditis elegans
      28. Setting Up the JBrowse Genome Browser
      29. Structured Query Language (SQL) Fundamentals
      30. Searching, Viewing, and Visualizing Data in the Biomolecular Interaction Network Database (BIND)
      31. The Human Gene Mutation Database (HGMD) and Its Exploitation in the Fields of Personalized Genomics and Molecular Evolution
      32. The Importance of Biological Databases in Biological Discovery
      33. The UCSC Genome Browser
      34. Using Apollo to Browse and Edit Genome Annotations
      35. Using CATH-Gene3D to Analyze the Sequence, Structure, and Function of Proteins
      36. Using Chado to Store Genome Annotation Data
      37. Using EMBL-EBI Services via Web Interface and Programmatically via Web Services
      38. Using the Ensembl Genome Server to Browse Genomic Sequence Data
      39. Using the Generic Genome Browser (GBrowse)
      40. Using the Generic Synteny Browser (GBrowse_syn)
      41. Using the MetaCyc Pathway Database and the BioCyc Database Collection
      42. Using Relational Databases for Improved Sequence Similarity Searching and Large-Scale Genomic Analyses
      43. Using The Arabidopsis Information Resource (TAIR) to Find Information About Arabidopsis Genes
      44. Using the iHOP Information Resource to Mine the Biomedical Literature on Genes, Proteins, and Chemical Compounds
      45. Using the iPlant Collaborative Discovery Environment
      46. Using the KEGG Database Resource
      47. Using the MEROPS Database for Proteolytic Enzymes and Their Inhibitors and Substrates
      48. Using the Reactome Database
      49. Using the Saccharomyces Genome Database (SGD) for Analysis of Genomic Information
      50. Using the Structure-Function Linkage Database to Characterize Functional Domains in Enzymes
      51. Using the Tools and Resources of the RCSB Protein Data Bank
    3. Cheminformatics
    4. DNA Analysis
    5. Expression Patterns
    6. Finding Genes
    7. Finding Similarities and Inferring Homologies
    8. Modeling Structure from Sequence
    9. Molecular Modeling
    10. Phylogenetic Trees
    11. Protein Analysis
    12. Proteomics
    13. Recognizing Functional Domains
    14. RNA Analysis
  3. Cell Biology
  4. Chemical Biology
  5. Gene Expression
  6. Genetics and Genomics
  7. Genetics and Genomics
  8. Intermolecular Interactions
  9. Intermolecular Interactions
  10. Microbiology
  11. Molecular Biology
  12. Nucleic Acid Chemistry
  13. Pharmacology and Drug Discovery
  14. Protein Production, Purification, and Analysis
  15. Proteomics
  16. RNA
  17. Structural Analysis of Biomolecules
  18. Supporting Lab Techniques