Current Protocols in Bioinformatics

Copyright © 1999-2012 by John Wiley and Sons, Inc. All Rights Reserved.

Current Protocols in Bioinformatics

Online ISBN: 9780471250951

DOI: 10.1002/0471250953

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  1. Bioinformatics
  2. Bioinformatics
    1.  
    2. Bioinformatics Fundamentals
    3. Biological Databases
      1. Access Guide to Human Proteinpedia
      2. Administering GBrowse Sites with WebGBrowse
      3. Creating Databases for Biological Information: An Introduction
      4. Using the DFCI Gene Index Databases for Biological Discovery
      5. DIANA-TarBase and DIANA Suite Tools: Studying Experimentally Supported microRNA Targets
      6. DNA Motif Databases and Their Uses
      7. You have free access to this content
        Exploring FlyBase Data Using QuickSearch
      8. Exploring Genetic, Genomic, and Phenotypic Data at the Rat Genome Database
      9. Exploring Short Linear Motifs Using the ELM Database and Tools
      10. Exploring Zebrafish Genomic, Functional and Phenotypic Data Using ZFIN
      11. Extracting Biological Meaning from Large Gene Lists with DAVID
      12. Human Mutation Databases
      13. Identifying Functional Sites Based on Prediction of Charged Group Behavior
      14. Installing a Local Copy of the Reactome Web Site and Knowledgebase
      15. Installing and Configuring CMap
      16. Investigating Protein Structure and Evolution with SCOP2
      17. You have free access to this content
        MalaCards: A Comprehensive Automatically-Mined Database of Human Diseases
      18. MetaboLights: An Open-Access Database Repository for Metabolomics Data
      19. Metaproteomics: Extracting and Mining Proteome Information to Characterize Metabolic Activities in Microbial Communities
      20. miRBase: microRNA Sequences and Annotation
      21. Modeling Biology Using Relational Databases
      22. mtDNA Variation and Analysis Using Mitomap and Mitomaster
      23. Using the NCBI Map Viewer to Browse Genomic Sequence Data
      24. PharmGKB: An Integrated Resource of Pharmacogenomic Data and Knowledge
      25. PubSearch and PubFetch: A Simple Management System for Semiautomated Retrieval and Annotation of Biological Information from the Literature
      26. Searching and Navigating UniProt Databases
      27. You have free access to this content
        Searching NCBI Databases Using Entrez
      28. Searching NCBI's dbSNP Database
      29. Searching Online Mendelian Inheritance in Man (OMIM): A Knowledgebase of Human Genes and Genetic Phenotypes
      30. Searching the Mouse Genome Informatics (MGI) Resources for Information on Mouse Biology from Genotype to Phenotype
      31. Searching WormBase for Information about Caenorhabditis elegans
      32. Setting Up the JBrowse Genome Browser
      33. SIGNOR: A Database of Causal Relationships Between Biological Entities—A Short Guide to Searching and Browsing
      34. Structured Query Language (SQL) Fundamentals
      35. Searching, Viewing, and Visualizing Data in the Biomolecular Interaction Network Database (BIND)
      36. The GeneCards Suite: From Gene Data Mining to Disease Genome Sequence Analyses
      37. The Human Gene Mutation Database (HGMD) and Its Exploitation in the Fields of Personalized Genomics and Molecular Evolution
      38. The Importance of Biological Databases in Biological Discovery
      39. The UCSC Genome Browser
      40. Using Apollo to Browse and Edit Genome Annotations
      41. Using CATH-Gene3D to Analyze the Sequence, Structure, and Function of Proteins
      42. Using Chado to Store Genome Annotation Data
      43. You have free access to this content
        Using DrugBank for In Silico Drug Exploration and Discovery
      44. Using EMBL-EBI Services via Web Interface and Programmatically via Web Services
      45. Using the Ensembl Genome Server to Browse Genomic Sequence Data
      46. Using the Generic Genome Browser (GBrowse)
      47. Using the Generic Synteny Browser (GBrowse_syn)
      48. Using the MetaCyc Pathway Database and the BioCyc Database Collection
      49. Using Relational Databases for Improved Sequence Similarity Searching and Large-Scale Genomic Analyses
      50. Using The Arabidopsis Information Resource (TAIR) to Find Information About Arabidopsis Genes
      51. Using the iHOP Information Resource to Mine the Biomedical Literature on Genes, Proteins, and Chemical Compounds
      52. Using the iPlant Collaborative Discovery Environment
      53. Using the KEGG Database Resource
      54. Using the MEROPS Database for Proteolytic Enzymes and Their Inhibitors and Substrates
      55. Using the NONCODE Database Resource
      56. Using the Reactome Database
      57. Using the Saccharomyces Genome Database (SGD) for Analysis of Genomic Information
      58. Using the Structure-Function Linkage Database to Characterize Functional Domains in Enzymes
      59. Using the Tools and Resources of the RCSB Protein Data Bank
      60. Using the Tools and Resources of the RCSB Protein Data Bank
    4. Cheminformatics
    5. DNA Analysis
    6. Expression Patterns
    7. Finding Genes
    8. Finding Similarities and Inferring Homologies
    9. Genome Variation
    10. Metabolomics
    11. Modeling Structure from Sequence
    12. Molecular Modeling
    13. Pathways and Molecular Interactions
    14. Phylogenetic Analysis
    15. Protein Analysis
    16. Proteomics
    17. Recognizing Functional Domains
    18. RNA Analysis
    19. Sequence Mapping and Assembly
  3. Cell Biology
  4. Chemical Biology
  5. Gene Expression
  6. Genetics and Genomics
  7. Genetics and Genomics
  8. Intermolecular Interactions
  9. Intermolecular Interactions
  10. Microbiology
  11. Molecular Biology
  12. Nucleic Acid Chemistry
  13. Pharmacology and Drug Discovery
  14. Protein Production, Purification, and Analysis
  15. Proteomics
  16. RNA
  17. Structural Analysis of Biomolecules
  18. Supporting Lab Techniques

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