Current Protocols in Bioinformatics

Current Protocols in Bioinformatics

Online ISBN: 9780471250951

DOI: 10.1002/0471250953

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  1. Bioinformatics
  2. Bioinformatics
    1. Bioinformatics Fundamentals
    2. Biological Databases
    3. Cheminformatics
    4. DNA Analysis
    5. Expression Patterns
    6. Finding Genes
    7. Finding Similarities and Inferring Homologies
    8. Genome Variation
    9. Modeling Structure from Sequence
    10. Molecular Modeling
    11. Pathways and Molecular Interactions
    12. Phylogenetic Trees
      1. Getting a Tree Fast: Neighbor Joining, FastME, and Distance-Based Methods
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        Inference of Episodic Changes in Natural Selection Acting on Protein Coding Sequences via CODEML
      3. Inferring Evolutionary Trees with PAUP*
      4. Inferring Protein Function from Homology Using the Princeton Protein Orthology Database (P-POD)
      5. Installing and Configuring CMap
      6. Maximum-Likelihood Analysis Using TREE-PUZZLE
      7. Phylogenetic Analysis with the iPlant Discovery Environment
      8. Phylogenomic Inference of Protein Molecular Function
      9. Studying RNA Homology and Conservation with Infernal: From Single Sequences to RNA Families
      10. Using MODELTEST and PAUP* to Select a Model of Nucleotide Substitution
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        Using OrthoMCL to Assign Proteins to OrthoMCL-DB Groups or to Cluster Proteomes Into New Ortholog Groups
      12. Using PEBBLE for the Evolutionary Analysis of Serially Sampled Molecular Sequences
      13. Using QIIME to Analyze 16S rRNA Gene Sequences from Microbial Communities
      14. Using RAxML to Infer Phylogenies
      15. Visualizing Phylogenetic Trees Using TreeView
      16. What If I Don't Have a Tree?: Split Decomposition and Related Models
    13. Protein Analysis
    14. Proteomics
    15. Recognizing Functional Domains
    16. RNA Analysis
    17. Sequence Mapping and Assembly
  3. Cell Biology
  4. Chemical Biology
  5. Gene Expression
  6. Genetics and Genomics
  7. Genetics and Genomics
  8. Intermolecular Interactions
  9. Intermolecular Interactions
  10. Microbiology
  11. Molecular Biology
  12. Nucleic Acid Chemistry
  13. Pharmacology and Drug Discovery
  14. Protein Production, Purification, and Analysis
  15. Proteomics
  16. RNA
  17. Structural Analysis of Biomolecules
  18. Supporting Lab Techniques