Current Protocols in Bioinformatics

Copyright © 1999-2012 by John Wiley and Sons, Inc. All Rights Reserved.

Current Protocols in Bioinformatics

Online ISBN: 9780471250951

DOI: 10.1002/0471250953

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  1. Bioinformatics
  2. Bioinformatics
    1.  
    2. Bioinformatics Fundamentals
    3. Biological Databases
    4. Cheminformatics
    5. DNA Analysis
    6. Expression Patterns
    7. Finding Genes
    8. Finding Similarities and Inferring Homologies
    9. Genome Variation
    10. Metabolomics
    11. Modeling Structure from Sequence
    12. Molecular Modeling
    13. Pathways and Molecular Interactions
    14. Phylogenetic Analysis
    15. Protein Analysis
    16. Proteomics
      1. Proteomics and the Analysis of Proteomic Data: 2013 Overview of Current Protein-Profiling Technologies
      2. Access Guide to Human Proteinpedia
      3. Analyzing Protein-Protein Interactions from Affinity Purification-Mass Spectrometry Data with SAINT
      4. Analyzing Shotgun Proteomic Data with PatternLab for Proteomics
      5. Biological Sequence Motif Discovery Using motif-x
      6. Byonic: Advanced Peptide and Protein Identification Software
      7. De Novo Interpretation of Tandem Mass Spectra
      8. DXMSMS Match Program for Automated Analysis of LC-MS/MS Data Obtained Using Isotopically Coded CID-Cleavable Cross-Linking Reagents
      9. Employing ProteoWizard to Convert Raw Mass Spectrometry Data
      10. Expression Data Analysis with Reactome
      11. Finding Protein Sequences Using PROWL
      12. Identifying Proteomic LC-MS/MS Data Sets with Bumbershoot and IDPicker
      13. LC-MS Data Processing with MAVEN: A Metabolomic Analysis and Visualization Engine
      14. Metaproteomics: Extracting and Mining Proteome Information to Characterize Metabolic Activities in Microbial Communities
      15. PatternLab: From Mass Spectra to Label-Free Differential Shotgun Proteomics
      16. PepArML: A Meta-Search Peptide Identification Platform for Tandem Mass Spectra
      17. Identification of Peptide Features in Precursor Spectra Using Hardklör and Krönik
      18. Predicting Peptide Retention Times for Proteomics
      19. Protein Identification Using Sorcerer 2 and SEQUEST
      20. Proteomics and the Analysis of Proteomic Data: An Overview of Current Protein-Profiling Technologies
      21. Scoring Large-Scale Affinity Purification Mass Spectrometry Datasets with MiST
      22. STRAP PTM: Software Tool for Rapid Annotation and Differential Comparison of Protein Post-Translational Modifications
      23. Tempest: Accelerated MS/MS Database Search Software for Heterogeneous Computing Platforms
      24. You have free access to this content
        The Search Engine for Multi-Proteoform Complexes: An Online Tool for the Identification and Stoichiometry Determination of Protein Complexes
      25. Installation and Use of LabKey Server for Proteomics
      26. Using BiblioSpec for Creating and Searching Tandem MS Peptide Libraries
      27. Using GFS to Identify Encoding Genomic Loci from Protein Mass Spectral Data
      28. Using PepExplorer to Filter and Organize De Novo Peptide Sequencing Results
      29. Using PeptideAtlas, SRMAtlas, and PASSEL: Comprehensive Resources for Discovery and Targeted Proteomics
      30. Using pLink to Analyze Cross-Linked Peptides
      31. Using the Proteomics Identifications Database (PRIDE)
      32. Using ProHits to Store, Annotate, and Analyze Affinity Purification–Mass Spectrometry (AP-MS) Data
      33. Using ProSight PTM and Related Tools for Targeted Protein Identification and Characterization with High Mass Accuracy Tandem MS Data
      34. Using PSEA-Quant for Protein Set Enrichment Analysis of Quantitative Mass Spectrometry-Based Proteomics
      35. Using the scan-x Web Site to Predict Protein Post-Translational Modifications
      36. Validation of Tandem Mass Spectrometry Database Search Results Using DTASelect
    17. Recognizing Functional Domains
    18. RNA Analysis
    19. Sequence Mapping and Assembly
  3. Cell Biology
  4. Chemical Biology
  5. Gene Expression
  6. Genetics and Genomics
  7. Genetics and Genomics
  8. Intermolecular Interactions
  9. Intermolecular Interactions
  10. Microbiology
  11. Molecular Biology
  12. Nucleic Acid Chemistry
  13. Pharmacology and Drug Discovery
  14. Protein Production, Purification, and Analysis
  15. Proteomics
  16. RNA
  17. Structural Analysis of Biomolecules
  18. Supporting Lab Techniques

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