Parallel Computing for Bioinformatics and Computational Biology: Models, Enabling Technologies, and Case Studies

Parallel Computing for Bioinformatics and Computational Biology: Models, Enabling Technologies, and Case Studies

Editor(s): Albert Y. Zomaya

Published Online: 9 JUN 2005

Print ISBN: 9780471718482

Online ISBN: 9780471756507

DOI: 10.1002/0471756504

About this Book

Discover how to streamline complex bioinformatics applications with parallel computing

This publication enables readers to handle more complex bioinformatics applications and larger and richer data sets. As the editor clearly shows, using powerful parallel computing tools can lead to significant breakthroughs in deciphering genomes, understanding genetic disease, designing customized drug therapies, and understanding evolution.

A broad range of bioinformatics applications is covered with demonstrations on how each one can be parallelized to improve performance and gain faster rates of computation. Current parallel computing techniques and technologies are examined, including distributed computing and grid computing. Readers are provided with a mixture of algorithms, experiments, and simulations that provide not only qualitative but also quantitative insights into the dynamic field of bioinformatics.

Parallel Computing for Bioinformatics and Computational Biology is a contributed work that serves as a repository of case studies, collectively demonstrating how parallel computing streamlines difficult problems in bioinformatics and produces better results. Each of the chapters is authored by an established expert in the field and carefully edited to ensure a consistent approach and high standard throughout the publication.

The work is organized into five parts:
* Algorithms and models
* Sequence analysis and microarrays
* Phylogenetics
* Protein folding
* Platforms and enabling technologies

Researchers, educators, and students in the field of bioinformatics will discover how high-performance computing can enable them to handle more complex data sets, gain deeper insights, and make new discoveries.

Table of contents

    1. You have free access to this content
    2. Chapter 6

      Computational Molecular Biology (pages 147–166)

      Azzedine Boukerche and Alba Cristina Magalhães Alves de Melo

    3. Chapter 15

      Phylogenetic Parameter Estimation on COWs (pages 347–368)

      Ekkehard Petzold, Daniel Merkle, Martin Middendorf, Arndt von Haeseler and Heiko A. Schmidt

    4. Chapter 22

      Cluster and Grid Infrastructure for Computational Chemistry and Biochemistry (pages 531–550)

      Kim K. Baldridge, Wibke Sudholt, Jerry P. Greenberg, Celine Amoreira, Yohann Potier, Ilkay Altintas, Adam Birnbaum, David Abramson, Colin Enticott and Slavisa Garic

    5. Chapter 25

      GIPSY: A Problem-Solving Environment for Bioinformatics Applications (pages 623–649)

      Rajendra R. Joshi, Sameer Ingle, Janaki Chintalapati, P. V. Jithesh, Uddhavesh Sonavane, Satish Mummadi, Dattatraya Bhat and Santosh Atanur

    6. Chapter 29

      Virtual Microscopy: Distributed Image Storage, Retrieval, Analysis, and Visualization (pages 737–763)

      T. Pan, S. Jewel, U. Catalyurek, P. Wenzel, G. Leone, S. Hastings, S. Oster, S. Langella, T. Kurc, J. Saltz and D. Cowden

    7. You have free access to this content