Plant Proteomics: Technologies, Strategies, and Applications

Copyright © 2008 John Wiley & Sons, Inc.

Plant Proteomics: Technologies, Strategies, and Applications

Editor(s): Ganesh Kumar Agrawal, Randeep Rakwal

Published Online: 7 JAN 2008

Print ISBN: 9780470069769

Online ISBN: 9780470369630

DOI: 10.1002/9780470369630

About this Book

Product Information

About The Product

Confidently face the challenges of proteomics research specific to plant science with the information in Plant Proteomics, which will introduce you to the techniques and methodologies required for the study of representative plant species. Read about proteomics studies in Arabidopsis, rice, and legumes and find information about common technologies like mass spectrometry and gel electrophoresis. Discover expression proteomics, functional proteomics, structural proteomics, bioinformatics, and systems biology, understand how to conduct proteomics studies in developing countries and underfunded laboratories, and gain access to guidelines for sample preparation.

Table of contents

    1. You have free access to this content
      Frontmatter (pages i–xliv)

    1. You have free access to this content
      Color Plates (pages c1–c8)

    1. Chapter 1

      An Introduction to Proteomics: Applications to Plant Biology (pages 1–7)

      Ralph A. Bradshaw

  4. Part I: Technologies

    1. Chapter 2

      Gel-Based Proteomics (pages 9–31)

      Pier Giorgio Righetti, Paolo Antonioli, Carolina Simò and Attilio Citterio

    2. Chapter 3

      Mass Spectrometry-Based Proteomics: Identifying Plant Proteins (pages 33–45)

      Eveline Bergmüller, Sacha Baginsky and Wilhelm Gruissem

    3. Chapter 4

      Chemical Proteomics (pages 47–59)

      Miriam C. Hagenstein, Olaf Kruse and Norbert Sewald

    4. Chapter 5

      The Arabidopsis Localizome: Subcellular Protein Localization and Interactions in ARABIDOPSIS (pages 61–81)

      Georgios Kitsios, Nicolas Tsesmetzis, Max Bush and John H. Doonan

    5. Chapter 6

      Secretome: Toward Deciphering the Secretory Pathways and Beyond (pages 83–90)

      Young-Ho Jung, Ganesh Kumar Agrawal, Randeep Rakwal and Nam-Soo Jwa

    6. Chapter 7

      Peptidomics (pages 91–104)

      Peter Schulz-Knappe

  5. Part II: Computational Proteomics

    1. Chapter 8

      Bioinformatics in Gel-Based Proteomics (pages 105–125)

      åsa M. Wheelock and Craig E. Wheelock

    2. Chapter 9

      Bioinformatics in MS-Based Proteomics (pages 127–139)

      Jacques Colinge

  6. Part III: Expression Proteomics

    1. Chapter 10

      An Overview of the Arabidopsis Proteome (pages 141–164)

      Jacques Bourguignon and Michel Jaquinod

    2. Chapter 11

      Rice Proteome at a Glance (pages 165–178)

      Ganesh Kumar Agrawal and Randeep Rakwal

    3. Chapter 12

      Proteomics of Legume Plants (pages 179–189)

      Satish Nagaraj, Zhentian Lei, Bonnie Watson and Lloyd W. Sumner

    4. Chapter 13

      Proteome of Seed Development and Germination (pages 191–206)

      Julie Catusse, Loïc Rajjou, Claudette Job and Dominique Job

    5. Chapter 14

      Endosperm and Amyloplast Proteomes of Wheat Grain (pages 207–222)

      William J. Hurkman, William H. Vensel, Frances M. Dupont, Susan B. Altenbach and Bob B. Buchanan

    6. Chapter 15

      Root Proteome (pages 223–237)

      Kuo-Chen Yeh, Chyi-Chuann Chen and Chuan-Ming Yeh

    7. Chapter 16

      Leaf Proteome (pages 239–248)

      Bin Kang, Shuyang Tu, Jiyuan Zhang and Siqi Liu

    8. Chapter 17

      Anther Proteome (pages 249–260)

      Nijat Imin

    9. Chapter 18

      Pollen Proteome (pages 261–273)

      Sandra Noir

    10. Chapter 19

      Microtubule-Binding Proteins (pages 275–289)

      Lori A. Vickerman and Douglas G. Muench

  7. Part IV: Organelle Proteomics

    1. Chapter 20

      Cell Wall (pages 291–307)

      Elisabeth Jamet, Hervé Canut, Cécile Albenne, Georges Boudart and Rafael Pont-Lezica

    2. Chapter 21

      Plasma Membrane: A Peculiar Status Among the Cell Membrane Systems (pages 309–326)

      Geneviève Ephritikhine, Anne Marmagne, Thierry Meinnel and Myriam Ferro

    3. Chapter 22

      Nucleus (pages 327–338)

      Subhra Chakraborty, Aarti Pandey, Asis Datta and Niranjan Chakraborty

    4. Chapter 23

      Chloroplast (pages 339–349)

      Thomas Kieselbach and Wolfgang P. Schröder

    5. Chapter 24

      Etioplast (pages 351–360)

      Anne von Zychlinski, Sonja Reiland, Wilhelm Gruissem and Sacha Baginsky

    6. Chapter 25

      The Plant Mitochondrial Proteome and the Challenge of Hydrophobic Protein Analysis (pages 361–375)

      Yew-Foon Tan and A. Harvey Millar

    7. Chapter 26

      Peroxisome (pages 377–389)

      Yuko Arai, Youichiro Fukao, Makoto Hayashi and Mikio Nishimura

    8. Chapter 27

      Unraveling Plant Vacuoles by Proteomics (pages 391–405)

      Songqin Pan and Natasha Raikhel

    9. Chapter 28

      Oil Bodies (pages 407–417)

      Pascale Jolivet, Luc Negroni, Sabine d'andréa and Thierry Chardot

  8. Part V: Modification Proteomics

    1. Chapter 29

      Phosphoproteins: Where are we Today? (pages 419–442)

      Florian Wolschin and Wolfram Weckwerth

    2. Chapter 30

      Proteome Analysis of the Ubiquitin Pathway (pages 443–453)

      Junmin Peng

    3. Chapter 31

      Analysis of the N-Glycosylation of Proteins in Plants (pages 455–467)

      Willy Morelle

    4. Chapter 32

      Functional Analysis and Phosphorylation Site Mapping of Leucine-Rich Repeat Receptor-Like Kinases (pages 469–483)

      Steven D. Clouse, Michael B. Goshe, Steven C. Huber and Jia Li

    5. Chapter 33

      Time to Search for Protein Kinase Substrates (pages 485–498)

      Birgit Kersten

    6. Chapter 34

      Tyrosine Phosphorylation in Plants: Emerging Evidence (pages 499–513)

      Andrea Carpi, Valeria Rossi and Francesco Filippini

    7. Chapter 35

      14–3–3 Proteins: Regulators of Key Cellular Functions (pages 515–524)

      Peter C. Morris

  9. Part VI: Multiprotein Complex

    1. Chapter 36

      Tap-Tagging System in Rice for Protein Complex Isolation (pages 525–542)

      Jai S. Rohila and Michael E. Fromm

    2. Chapter 37

      Tap Strategy in Arabidopsis Protein Complex Isolation (pages 543–556)

      Vicente Rubio and Xing Wang Deng

    3. Chapter 38

      Blue-Native Page in Studying Protein Complexes (pages 557–569)

      Holger Eubel and A. Harvey Millar

    4. Chapter 39

      Protein–Protein Interaction Mapping in Plants (pages 571–583)

      Joachim F. Uhrig

  10. Part VII: Plant Defense and Stress

    1. Chapter 40

      Proteomics in Plant Defense Response (pages 585–604)

      Sun Tae Kim and Kyu Young Kang

    2. Chapter 41

      Proteome Analysis of Cellular Responses to Abiotic Stresses in Plants (pages 605–627)

      Hans-Peter Mock and Andrea Matros

    3. Chapter 42

      Proteomics of Biotrophic Plant–Microbe Interactions: Symbioses Lead the March (pages 629–643)

      Ghislaine Recorbet and Eliane Dumas-Gaudot

    4. Chapter 43

      Proteomics Approaches to Construct Calcium Signaling Networks in Plants (pages 645–657)

      Irene S. Day and A. S. N. Reddy

  11. Part VIII: Structural Proteomics

    1. Chapter 44

      Cell-Free Expression System for Eukaryotic Proteins (pages 659–669)

      Yaeta Endo and Tatsuya Sawasaki

    2. Chapter 45

      Protein Structure Determination (pages 671–692)

      Jian-Hua Zhao and Hsuan-Liang Liu

  12. Part IX: Other Topics in Plant Proteomics

    1. Chapter 46

      Proteomics in Context of Systems Biology (pages 693–711)

      Serhiy Souchelnytskyi

    2. Chapter 47

      Proteomics in Developing Countries (pages 713–729)

      Nat N. V. Kav, Sanjeeva Srivastava, William Yajima and Shakir Ali

    1. You have free access to this content
      Index (pages 731–764)

SEARCH