Molecular Microbial Ecology of the Rhizosphere: Volume 1 & 2

Molecular Microbial Ecology of the Rhizosphere: Volume 1 & 2

Editor(s): Frans J. de Bruijn

Published Online: 18 MAR 2013 08:37AM EST

Print ISBN: 9781118296172

Online ISBN: 9781118297674

DOI: 10.1002/9781118297674

About this Book

Molecular Microbial Ecology of the Rhizosphere covers current knowledge on the molecular basis of plant-microbe interactions in the rhizosphere. Also included in the book are both reviews and research-based chapters describing experimental materials and methods. Edited by a leader in the field, with contributions from authors around the world, Molecular Microbial Ecology of the Rhizosphere brings together the most up-to-date research in this expanding area, and will be a valuable resource for molecular microbiologists and plant soil scientists, as well as upper level students in microbiology, ecology, and agriculture.

Table of contents

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  1. Section 1: Focus Chapters

    1. Chapter 2

      Using Genomics to Unveil Bacterial Determinants of Rhizosphere Life Style (pages 5–16)

      María-Isabel Ramos-González, Miguel A. Matilla, José-Miguel Quesada, Juan L. Ramos and Manuel Espinosa-Urgel

    2. Chapter 4

      Microbial Interactions in the Rhizosphere (pages 29–44)

      José-Miguel Barea, María-José Pozo, Rosario Azcón and Concepción Azcón-Aguilar

    3. Chapter 7

      Combining Molecular Microbial Ecology with Ecophysiology and Plant Genetics for a Better Understanding of Plant–Microbial Communities' Interactions in the Rhizosphere (pages 69–86)

      Anouk Zancarini, Clémentine Lépinay, Judith Burstin, Gérard Duc, Philippe Lemanceau, Delphine Moreau, Nathalie Munier-Jolain, Barbara Pivato, Thierry Rigaud, Christophe Salon and Christophe Mougel

  2. Section 2: Plant-Mediated Structuring of Bacterial Communities in the Rhizosphere

    1. Chapter 9

      Unraveling the Shed of Unexplored Rhizosphere Microbial Diversity (pages 103–114)

      Puneet S. Chauhan, Vasvi Chaudhry, Sandhya Mishra, Aradhana Mishra and Chandra S. Nautiyal

  3. Section 3: Plant Genetics and Rhizobacterial Communities

    1. Chapter 23

      Arabidopsis thaliana as Model for Studies on the Bacterial Root Microbiota (pages 243–256)

      Klaus Schlaeppi, Emiel Ver Loren van Themaat, Davide Bulgarelli and Paul Schulze-Lefert

  4. Section 4: Hormones and other Signals and Rhizomicrobes

    1. Chapter 27

      Control of the Cooperation Between Plant Growth-Promoting Rhizobacteria and Crops by Rhizosphere Signals (pages 279–293)

      Benoît Drogue, Emeline Combes-Meynet, Yvan Moënne-Loccoz, Florence Wisniewski-Dyé and Claire Prigent-Combaret

    2. Chapter 33

      Strigolactone Biosynthesis and Biology (pages 355–371)

      Yanxia Zhang, Imran Haider, Carolien Ruyter-Spira and Harro J. Bouwmeester

  5. Section 5: Endophytes

  6. Section 6: Symbiotic Plant–Microbe Interactions

  7. Section 7: PGPR, Biocontrol, and Disease-Suppressive Bacteria

    1. Chapter 53

      Plant Growth Promotion by Microbes (pages 559–573)

      Ben J. J. Lugtenberg, Natalia Malfanova, Faina Kamilova and Gabriele Berg

    2. Chapter 54

      Microbial Control of Plant Root Diseases (pages 575–586)

      Ben J. J. Lugtenberg, Natalia Malfanova, Faina Kamilova and Gabriele Berg

    3. Chapter 55

      Biocontrol and Osmoprotection for Plants under Salinated Conditions (pages 587–592)

      Gabriele Berg, Mohammadali Alavi, Christoph S. Schmidt, Christin Zachow, Dilfuza Egamberdieva, Faina Kamilova and Ben J. J. Lugtenberg

    4. Chapter 56

      Genetics and Evolution of 2, 4-Diacetylphloroglucinol Synthesis in Pseudomonas Fluorescens (pages 593–605)

      Danielle M. Troppens, Jennifer A. Moynihan, Mathieu Barret, Fergal O'Gara and John P. Morrissey

    5. Chapter 57

      Suppression of Crown Gall Disease by Rhizosphere Bacteria and Agrobacterium-Specific Bacteriophages (pages 607–613)

      Leonid Chernin, Natela Toklikishvili, Natalia Dandurishvili, Marina Tediashvili and Alexander Vainstein

    6. Chapter 60

      Marker-Assisted Selection of Novel Bacteria Contributing to Soil-Borne Plant Disease Suppression (pages 637–642)

      Jun-Kyung Park, Seung-Hwan Lee, Songhee Han, Jin-Cheol Kim, Young Cheol and Brian McSpadden Gardener

    7. Chapter 61

      Combined Effects of Wheat Roots and Pathogenic Fungus Gaeumannomyces graminis var. tritici on Gene Expression of the Biocontrol Bacterium Pseudomonas fluorescens Pf29Arp (pages 643–653)

      Matthieu Barret, Pascale Frey-Klett, Anne-Yvonne Guillerm-Erckelboudt, Morgane Boutin, Gregory Guernec, Muriel Marchi, Stéphanie Daval and Alain Sarniguet

  8. Section 8: Biofilm Formation and Attachment to Roots

  9. Section 9: Quorum Sensing and Signaling

    1. Chapter 70

      Understanding Root–Microbiome Interactions (pages 743–754)

      Gaston Zolla, Matthew G Bakker, Dayakar V Badri, Jacqueline M Chaparro, Amy M Sheflin, Daniel K Manter and Jorge Vivanco

  10. Section 10: Genomic Sequencing and Screening of Genes/Promoters Activated in the Natural Environment

    1. Chapter 81

      Genome Analysis, Ecology, and Plant Growth Promotion of the Endophyte Burkholderia phytofirmans Strain PsJN (pages 865–874)

      Birgit Mitter, Alexandra Petric, Patrick SG Chain, Friederike Trognitz, Jerzy Nowak, Stéphane Compant and Angela Sessitsch

  11. Section 11: Marker and Reporter Genes for Plant-Host Interaction Studies

  12. Section 12: Phytoremediation and Heavy-Metal Tolerance in the Rhizosphere

    1. Chapter 95

      Stimulation of Rhizosphere Microbial Communities During Chemophytostabilization of a Pb–Zn Mine Soil (pages 1013–1022)

      María A. Galende, Lur Epelde, M T. Gómez-Sagasti, Oihana Barrutia, Antonio Hernández, José M. Becerril, George A. Kowalchuk and Carlos Garbisu

  13. Section 13: Climate Change Effects on Soil/Rhizosphere Microbial Communities

  14. Section 14: Metagenomics and the Soil/Rhizosphere

    1. Chapter 108

      Unraveling the Rhizosphere Using the cpn 60 Genomic Marker and Pyrosequencing (pages 1129–1136)

      George Lazarovits, Amy L. Turnbull, Brenda Haug, Matthew G. Links, Janet E. Hill and Sean M. Hemmingsen

  15. Section 15: Engineering the Rhizosphere: The “Biased Rhizosphere” Concept

    1. Chapter 110

      The “Biased Rhizosphere” Concept and Advances in the Omics Era to Study Bacterial Competitiveness and Persistence in the Phytosphere (pages 1145–1161)

      Michael A. Savka, Yves Dessaux, Brian B. McSpadden Gardener, Samuel Mondy, Petra R. A. Kohler, Frans J. de Bruijn and Silvia Rossbach

  16. Section 16: Concluding Chapters

    1. Chapter 115

      Rhizophagy—A New Dimension of Plant–Microbe Interactions (pages 1199–1207)

      Chanyarat Paungfoo-Lonhienne, Susanne Schmidt, Richard I. Webb and Thierry G. A. Lonhienne

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