Chapter 5. Gene Expression Databases
- Arthur M. Lesk
Published Online: 8 JUN 2005
DOI: 10.1002/0470012420.ch5
Copyright © 2005 John Wiley & Sons, Ltd
Book Title
Database Annotation in Molecular Biology
Additional Information
How to Cite
Parkinson, H. (2005) Gene Expression Databases, in Database Annotation in Molecular Biology (ed A. M. Lesk), John Wiley & Sons, Ltd, Chichester, UK. doi: 10.1002/0470012420.ch5
Editor Information
Department of Biochemistry and Molecular Biology, The Pennsylvania State University, 512 Wartik Laboratory, University Park, PA 16802, USA
Publication History
- Published Online: 8 JUN 2005
- Published Print: 26 NOV 2004
ISBN Information
Print ISBN: 9780470856819
Online ISBN: 9780470012420
- Summary
- Chapter
Keywords:
- transcriptomic data;
- microarray;
- bioinformatics;
- affymetrix system;
- oligonucleotides;
- meta-data;
- medline abstracts;
- hybridization;
- gene expression data
Summary
This chapter contains sections titled:
Introduction
What Do We Mean by Microarray Gene Expression Data?
Data Complexity
Minimum Information About a Microarray Experiment (MIAME)
Journals and MIAME
Storage and Exchange Formats: MAGE-OM and MAGE-ML
ArrayExpress
Annotation Tools
Curation
Standardization and Semantics
Public Microarray Databases
ArrayExpress, an Example of a Public Repository
Submissions to ArrayExpress
MIAMExpress and Other MIAME Compliant Annotation Systems
Databases of Protein Expression Patterns
The Gene Expression Database (GXD)
Conclusion
References