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Chapter 7. Genomics and Proteomics: Design and Sources of Annotation

  1. Arthur M. Lesk
  1. K. Mayer1,
  2. G. Mannhaupt2

Published Online: 8 JUN 2005

DOI: 10.1002/0470012420.ch7

Book Title

Database Annotation in Molecular Biology

Database Annotation in Molecular Biology

Additional Information

How to Cite

Mayer, K. and Mannhaupt, G. (2005) Genomics and Proteomics: Design and Sources of Annotation, in Database Annotation in Molecular Biology (ed A. M. Lesk), John Wiley & Sons, Ltd, Chichester, UK. doi: 10.1002/0470012420.ch7

Editor Information

  1. Department of Biochemistry and Molecular Biology, The Pennsylvania State University, 512 Wartik Laboratory, University Park, PA 16802, USA

Author Information

  1. 1

    MIPS at GSF, Research Center for Environment and Health, Ingostädter Landstr. 1, 85758 Neuherberg, Germany

  2. 2

    Department of Genome Oriented Bioinformatics, Technical University of Munich, Wissenschaftszentrum Weihenstephan, 85350 Freising-Weihenstephan, Germany

Publication History

  1. Published Online: 8 JUN 2005
  2. Published Print: 26 NOV 2004

ISBN Information

Print ISBN: 9780470856819

Online ISBN: 9780470012420

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CHAPTER TOOLS

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Keywords:

  • genome analysis;
  • hexanucleotide frequency;
  • codon composition;
  • gene modeling;
  • genome analysis;
  • gene annotation;
  • gene extraction;
  • bacterial genomes;
  • heterogeneous data

Summary

This chapter contains sections titled:

  • Beyond the Sequence: the Challenge of Complete Genome Analysis

  • Extracting the Genes

  • Organism Specific Peculiarities

  • Topology of Genomes

  • Gene Extraction Pipelines

  • Added Value and Knowledge

  • Beyond the Parts List

  • References

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