20. Introducing Bioperl

  1. Michael Moorhouse1 and
  2. Paul Barry2

Published Online: 8 JUN 2005

DOI: 10.1002/0470020571.ch20

Bioinformatics Biocomputing and Perl: An Introduction to Bioinformatics Computing Skills and Practice

Bioinformatics Biocomputing and Perl: An Introduction to Bioinformatics Computing Skills and Practice

How to Cite

Moorhouse, M. and Barry, P. (2004) Introducing Bioperl, in Bioinformatics Biocomputing and Perl: An Introduction to Bioinformatics Computing Skills and Practice, John Wiley & Sons, Ltd, Chichester, UK. doi: 10.1002/0470020571.ch20

Author Information

  1. 1

    Post-Doctoral Worker from Erasmus MC, The Netherlands

  2. 2

    Department of Computing and Networking, Institute of Technology, Carlow, Ireland

Publication History

  1. Published Online: 8 JUN 2005
  2. Published Print: 26 MAY 2004

ISBN Information

Print ISBN: 9780470853313

Online ISBN: 9780470020579

SEARCH

Keywords:

  • Bioperl;
  • Project Ensembl;
  • Genome Browser;
  • Fetching Sequences;
  • phlyogenetics investigation;
  • Basic Local Alignment Search Tool (BLAST);
  • parsing;
  • FASTA format;
  • Sequence Retrieval System (SRS)

Summary

This chapter contains sections titled

  • What is Bioperl?

  • Bioperl's Relationship to Project Ensembl

  • Installing Bioperl

  • Using Bioperl: Fetching Sequences

  • Remote BLAST Searches

  • Where to from Here

  • The Maxims Repeated