Chapter 3. Analysis of DNA Sequences by Hybridization

  1. Charles R. Cantor,
  2. Cassandra L. Smith

Published Online: 20 JUN 2002

DOI: 10.1002/0471220566.ch3

Genomics: The Science and Technology Behind the Human Genome Project

Genomics: The Science and Technology Behind the Human Genome Project

How to Cite

Cantor, C. R. and Smith, C. L. (2002) Analysis of DNA Sequences by Hybridization, in Genomics: The Science and Technology Behind the Human Genome Project, John Wiley & Sons, Inc., New York, USA. doi: 10.1002/0471220566.ch3

Author Information

  1. Center for Advanced Biotechnology, Boston University, Boston, Massachusetts

Publication History

  1. Published Online: 20 JUN 2002
  2. Published Print: 2 FEB 1999

ISBN Information

Print ISBN: 9780471599081

Online ISBN: 9780471220565

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Keywords:

  • DNA sequences;
  • hybridization;
  • selectivity;
  • sensitivity;
  • double strands;
  • single strands;
  • thermodynamics;
  • melting;
  • short duplexes;
  • imperfectly paired duplexes;
  • filters;
  • sensitive detection

Summary

By current methodology we are able to determine the presence or absence of almost any 20-bp DNA sequence within a single cell. This analysis takes place at the level of single molecules. Two requirements must be met to perform such an exquisitely demanding analysis. There must be sufficient experimental sensitivity to detect the presence of the sequence. There must also be sufficient experimental selectivity to discriminate between the desired, true target sequence and all other similar sequences, which may differ from the target by as little as one base. This chapter presents a discussion of the analysis of DNA sequences by hybridization.