UNIT 7.3 Analysis of Gene-Expression Data Using J-Express
Published Online: 1 MAR 2008
Copyright © 2008 by John Wiley and Sons, Inc.
Lab Protocol Title
Current Protocols in Bioinformatics
How to Cite
Stavrum, A. K., Petersen, K., Jonassen, I. and Dysvik, B. 2008. Analysis of Gene-Expression Data Using J-Express. Current Protocols in Bioinformatics. 21:7.3:7.3.1–7.3.25.
- Published Online: 1 MAR 2008
- Published Print: MAR 2008
The J-Express package has been designed to facilitate the analysis of microarray data with an emphasis on efficiency, usability, and comprehensibility. The J-Express system provides a powerful and integrated platform for the analysis of microarray gene expression data. It is platform-independent in that it requires only the availability of a Java virtual machine on the system. The system includes a range of analysis tools and a project management system supporting the organization and documentation of an analysis project. This unit describes the J-Express tool, emphasizing central concepts and principles, and gives examples of how it can be used to explore gene expression data sets. Curr. Protoc. Bioinform. 21:7.3.1-7.3.25. © 2008 by John Wiley & Sons, Inc.
- gene expression;
- spot intensity quantitation