Unit

UNIT 8.20 Expression Data Analysis with Reactome

  1. Steve Jupe,
  2. Antonio Fabregat,
  3. Henning Hermjakob

Published Online: 9 MAR 2015

DOI: 10.1002/0471250953.bi0820s49

Current Protocols in Bioinformatics

Current Protocols in Bioinformatics

How to Cite

Jupe, S., Fabregat, A., and Hermjakob, H. 2015. Expression Data Analysis with Reactome. Curr. Protoc. Bioinform. 49:8.20.1-8.20.9. doi: 10.1002/0471250953.bi0820s49

Author Information

  1. European Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom

Publication History

  1. Published Online: 9 MAR 2015

Abstract

The Reactome database of curated biological pathways provides a tool for visualizing user-supplied expression data as an overlay on pathway diagrams, thereby affording an effective means to examine expression of the constituents of the pathway and determine whether all that are necessary are present. Several experiments can be visualized in succession, to determine whether expression changes with experimental conditions, a useful feature for examining a time-course, dose-response, or disease progression. © 2015 by John Wiley & Sons, Inc.

Keywords:

  • reactome;
  • pathway;
  • expression analysis;
  • microarray;
  • quantitative proteomics