Unit

UNIT 9.1 Creating Databases for Biological Information: An Introduction

  1. Lincoln Stein

Published Online: 1 JUN 2013

DOI: 10.1002/0471250953.bi0901s42

Current Protocols in Bioinformatics

Current Protocols in Bioinformatics

How to Cite

Stein, L. 2013. Creating Databases for Biological Information: An Introduction. Current Protocols in Bioinformatics. 42:9.1:9.1.1–9.1.10.

Author Information

  1. Ontario Institute for Cancer Research, Toronto, Ontario, Canada

Publication History

  1. Published Online: 1 JUN 2013

Abstract

The essence of bioinformatics is dealing with large quantities of information. Whether it be sequencing data, microarray data files, mass spectrometric data (e.g., fingerprints), the catalog of strains arising from an insertional mutagenesis project, or even large numbers of PDF files, there inevitably comes a time when the information can simply no longer be managed with files and directories. This is where databases come into play. This unit briefly reviews the characteristics of several database management systems, including flat file, indexed file, relational databases, and NoSQL databases. It compares their strengths and weaknesses and offers some general guidelines for selecting an appropriate database management system. Curr. Protoc. Bioinform. 42:9.1.1-9.1.10. © 2013 by John Wiley & Sons, Inc.

Keywords:

  • bioinformatics;
  • bioinformatics fundamentals;
  • biological databases