UNIT 10.7 Using QIIME to Analyze 16S rRNA Gene Sequences from Microbial Communities
Published Online: 1 DEC 2011
Copyright © 2011 by John Wiley & Sons, Inc.
Lab Protocol Title
Current Protocols in Bioinformatics
How to Cite
Kuczynski, J., Stombaugh, J., Walters, W. A., González, A., Caporaso, J. G. and Knight, R. 2011. Using QIIME to Analyze 16S rRNA Gene Sequences from Microbial Communities. Current Protocols in Bioinformatics. 36:10.7:10.7.1–10.7.20.
- Published Online: 1 DEC 2011
- Published Print: DEC 2011
QIIME (canonically pronounced “chime”) is a software application that performs microbial community analysis. It is an acronym for Quantitative Insights Into Microbial Ecology, and has been used to analyze and interpret nucleic acid sequence data from fungal, viral, bacterial, and archaeal communities. The following protocols describe how to install QIIME on a single computer and use it to analyze microbial 16S sequence data from nine distinct microbial communities. Curr. Protoc. Bioinform. 36:10.7.1-10.7.20. © 2011 by John Wiley & Sons, Inc.
- microbial ecology;