UNIT 11.10 From FastQ Data to High-Confidence Variant Calls: The Genome Analysis Toolkit Best Practices Pipeline

  1. Geraldine A. Van der Auwera1,
  2. Mauricio O. Carneiro1,
  3. Christopher Hartl1,
  4. Ryan Poplin1,
  5. Guillermo del Angel1,
  6. Ami Levy-Moonshine1,
  7. Tadeusz Jordan1,
  8. Khalid Shakir1,
  9. David Roazen1,
  10. Joel Thibault1,
  11. Eric Banks1,
  12. Kiran V. Garimella2,
  13. David Altshuler1,
  14. Stacey Gabriel1,
  15. Mark A. DePristo1

Published Online: 15 OCT 2013

DOI: 10.1002/0471250953.bi1110s43

Current Protocols in Bioinformatics

Current Protocols in Bioinformatics

How to Cite

Van der Auwera, G. A., Carneiro, M. O., Hartl, C., Poplin, R., del Angel, G., Levy-Moonshine, A., Jordan, T., Shakir, K., Roazen, D., Thibault, J., Banks, E., Garimella, K. V., Altshuler, D., Gabriel, S. and DePristo, M. A. 2013. From FastQ Data to High-Confidence Variant Calls: The Genome Analysis Toolkit Best Practices Pipeline. Current Protocols in Bioinformatics. 11:11.10:11.10.1–11.10.33.

Author Information

  1. 1

    Genome Sequencing and Analysis Group, Broad Institute, Cambridge, Massachusetts

  2. 2

    Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford, United Kingdom

Publication History

  1. Published Online: 15 OCT 2013

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