UNIT 11.11 Using SOAPaligner for Short Reads Alignment
Published Online: 12 DEC 2013
Copyright © 2013 John Wiley & Sons, Inc. All rights reserved.
Lab Protocol Title
Current Protocols in Bioinformatics
How to Cite
Gu, S., Fang, L. and Xu, X. 2013. Using SOAPaligner for Short Reads Alignment. Current Protocols in Bioinformatics. 11:11.11:11.11.1–11.11.17.
- Published Online: 12 DEC 2013
This unit shows how to use the SOAPaligner package to align short reads to reference. The use of the two most common versions of SOAPaligner, SOAP2 and SOAP3-dp, will be described in detail. The unit also includes a protocol for SNP calling from SOAP2 alignment with SOAPsnp. Curr. Protoc. Bioinform. 44:11.11.1-11.11.17. © 2013 by John Wiley & Sons, Inc.
- SNP calling;