Unit

UNIT 12.2 RNA Secondary Structure Analysis Using the Vienna RNA Package

  1. Ivo L. Hofacker

Published Online: 1 JUN 2009

DOI: 10.1002/0471250953.bi1202s26

Current Protocols in Bioinformatics

Current Protocols in Bioinformatics

How to Cite

Hofacker, I. L. 2009. RNA Secondary Structure Analysis Using the Vienna RNA Package. Current Protocols in Bioinformatics. 26:12.2:12.2.1–12.2.16.

Author Information

  1. University of Vienna-Institute of Theoretical Chemistry, Vienna, Austria

Publication History

  1. Published Online: 1 JUN 2009
  2. Published Print: JUN 2009

Abstract

This unit documents how to use the Vienna RNA package for RNA secondary structure analysis. Possible tasks include structure prediction for single sequences, prediction of consensus structures, prediction of RNA-RNA interactions, and sequence design. Curr. Protoc. Bioinform. 26:12.2.1-12.2.16. © 2009 by John Wiley & Sons, Inc.

Keywords:

  • structure prediction;
  • secondary structure;
  • RNA structure;
  • consensus structure;
  • sequence design;
  • RNA interactions