UNIT 12.11 Comparative ncRNA Gene and Structure Prediction Using Foldalign and FoldalignM
Published Online: 1 SEP 2012
Copyright © 2012 by John Wiley & Sons, Inc.
Lab Protocol Title
Current Protocols in Bioinformatics
How to Cite
Havgaard, J., Kaur, S. and Gorodkin, J. 2012. Comparative ncRNA Gene and Structure Prediction Using Foldalign and FoldalignM. Current Protocols in Bioinformatics. 39:12.11:12.11.1–12.11.15.
- Published Online: 1 SEP 2012
This unit describes how to use Foldalign and FoldalignM to make structural alignments of non-protein-coding-RNA (ncRNA). These tools can be used to find new ncRNAs, to find the structure of novel ncRNAs, and to improve alignments for known ncRNAs. Curr. Protoc. Bioinform. 39:12.11.1-12.11.15. © 2012 by John Wiley & Sons, Inc.
- RNA structural alignment;
- RNA structure prediction;
- RNA multiple sequence alignment;
- ncRNA gene finding;
- non-coding RNA