Unit

UNIT 13.8 Using the Proteomics Identifications Database (PRIDE)

  1. Lennart Martens,
  2. Phil Jones,
  3. Richard Côté

Published Online: 1 MAR 2008

DOI: 10.1002/0471250953.bi1308s21

Lab Protocol Title

Current Protocols in Bioinformatics

Current Protocols in Bioinformatics

Additional Information

How to Cite

Martens, L., Jones, P. and Côté, R. 2008. Using the Proteomics Identifications Database (PRIDE). Current Protocols in Bioinformatics. 21:13.8:13.8.1–13.8.19.

Author Information

  1. EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, Cambridge

Publication History

  1. Published Online: 1 MAR 2008
  2. Published Print: MAR 2008
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Abstract

The Proteomics Identifications Database (PRIDE) is a public data repository designed to store, disseminate, and analyze mass spectrometry based proteomics datasets. The PRIDE database can accommodate any level of detailed metadata about the submitted results, which can be queried, explored, viewed, or downloaded via the PRIDE Web interface. The PRIDE database also provides a simple, yet powerful, access control mechanism that fully supports confidential peer-reviewing of data related to a manuscript, ensuring that these results remain invisible to the general public while allowing referees and journal editors anonymized access to the data. This unit describes in detail the functionality that PRIDE provides with regards to searching, viewing, and comparing the available data, as well as different options for submitting data to PRIDE. Curr. Protoc. Bioinform. 21:13.8.1-13.8.19. © 2008 by John Wiley & Sons, Inc.

Keywords:

  • PRIDE;
  • proteomics;
  • identifications;
  • database;
  • repository;
  • standards
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